Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02176 ATGCCAGTCTCTTGGAAACACTTTAGCTCGCAAGTAAAGAGGGCACTGACTTGTAGTCAATCATCAACGCTGAACCAGAGAGACGCACATGATGAAATCCAAAGCTATGTATACGACGTGTTTATCAGTTTCAGAGGTCCCGACTCTCGCAACACCTTTGTTGACCATCTCTATGCTAGTCTCACTAGAAAAGGTATTTTCGTTTTCAAGGATGACAAACAACTTCAAAAAGGTGAATCCATTTCGCCTCAACTTCTACACGCAATTCAACATTCACGGATTTCTATTATTGTCTTCTCTAAAGATTATGCTTCTTCAACTTGGTGTTTGGATGAAATGCTTGCTATTGCTCATTGCCGTACTGAAATGAAACAAATTGTTTTTCCTGTTTTCTATGATGTTGATCCATATCATGTGAGAAAACAGAATGGTGTTTACGAGAGTGATTTTATTTTACATTCCGACCAATTCAAACATGATCCGGACAAGGTTGATGCGTGGAAGAGAGATATGACCATTCTGGCTTCGTTAGCTGGTTGGGATGTTAGAGATAAGCCAGAATTTAAAGAAATTGAAAATATTGTTCAGGCTGTAATAGAAAAGTTGGGTCGGAAATTCTCTGCAGGGATTGCTGATGGACTTATTGGAATACAACCTCGAGTAAAAATATTAGAAAATCTTTTAAAACTAAGCTCAAATGGTGACGATTTTCGAGTTTTAGGAATATGGGGGATGGATGGCATAGGAAAGACAACTCTTGCGAGTGTCTTGTATGACACAATCTCACATCACTATCAATTTGGTGCTTGTTGTTTTATCGAGAATGTTAGCAGAGTTTATAGAGATGGCGGTGCTATTGCTGTTCAAAAACAAATTCTTCGTCAAACTCTGGAAGAAAAAAATATGGAAACATACACTTCTTCCGACATATCTGGAATCATACTAAACAGGCTATACAACATGAAGCTCCTTATAGTTCTTGACGATGTTGATCAATTTGAGCAATTGCAAGAATTGCACATAAATCCCAAACTACTTCGTCCAGGAAGTAGAATAATCATAACCACTAGAGATGTGCATATTCTTGAATTGTATGGAGCAGATAGAATTCACGAGGTTGAATTGATGAATGATAATGATGCTCGTGAACTTCTATGTAGAAAAGCCTTTAGTAGTGATAATTCTAGTAGTGATTATGCAGAACTTATTGGTATGGTACTTAAGTATGCTCAAGGTCTTCCATTAGCAATTAGAGTAATGGGTTCTTTCTTGTATAATAGAAATACTTCCCAATGGAGAGCTACCTTGGAAGGATTGGAGAATAATCCAGATAGTGGAATCATGAAAGTGCTTCAGTCAAGTTTTGAGGGGCTCGAGCAAAGAGAGAGAGAAATATTTTTGCACATTGCTTGCTTCTTTGATGGGGAGAGGGAGGATTATGTGAGGAGAATTCTAGATGCTTGTGGATTGCAGCCTGATATTGGACTTTCACTTATTGCTGAAAAATCGTTCATAACCATTAGAAACCAAGAAATTCATATGCATAAAATGTTGCAAGAGTTGGGGAAGAAAAGTGTTCGGGAACAGCATCCTGATGAGCCAAGATTATGGAGCAGATTGTGGCTTCCCAATGATTTGTATGATGCGATGATTACAAAACGGGGACCAGTAAAAGCTAAAGCCATAATTCTAAATCAGAAGAAGGATGTCTGTGAATTCAATCCGTTGACGGATAAAGATTTAGCAAAATTGAAAAACTTGAAAGTGCTCATATTATATCATTCAAAGTTTTCAGGAAGCCGCAAATTGAAGGATAGAAAAACACTTAGAAAGGGGGGGATTGAATAA 1848 0.3766 MPVSWKHFSSQVKRALTCSQSSTLNQRDAHDEIQSYVYDVFISFRGPDSRNTFVDHLYASLTRKGIFVFKDDKQLQKGESISPQLLHAIQHSRISIIVFSKDYASSTWCLDEMLAIAHCRTEMKQIVFPVFYDVDPYHVRKQNGVYESDFILHSDQFKHDPDKVDAWKRDMTILASLAGWDVRDKPEFKEIENIVQAVIEKLGRKFSAGIADGLIGIQPRVKILENLLKLSSNGDDFRVLGIWGMDGIGKTTLASVLYDTISHHYQFGACCFIENVSRVYRDGGAIAVQKQILRQTLEEKNMETYTSSDISGIILNRLYNMKLLIVLDDVDQFEQLQELHINPKLLRPGSRIIITTRDVHILELYGADRIHEVELMNDNDARELLCRKAFSSDNSSSDYAELIGMVLKYAQGLPLAIRVMGSFLYNRNTSQWRATLEGLENNPDSGIMKVLQSSFEGLEQREREIFLHIACFFDGEREDYVRRILDACGLQPDIGLSLIAEKSFITIRNQEIHMHKMLQELGKKSVREQHPDEPRLWSRLWLPNDLYDAMITKRGPVKAKAIILNQKKDVCEFNPLTDKDLAKLKNLKVLILYHSKFSGSRKLKDRKTLRKGGIE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02176 615 SUPERFAMILY Toll/Interleukin receptor TIR domain 34 180 IPR035897 -
Vivi6g02176 615 PRINTS Disease resistance protein signature 239 254 - -
Vivi6g02176 615 PRINTS Disease resistance protein signature 317 331 - -
Vivi6g02176 615 PRINTS Disease resistance protein signature 582 598 - -
Vivi6g02176 615 PRINTS Disease resistance protein signature 410 424 - -
Vivi6g02176 615 Gene3D - 32 207 IPR035897 -
Vivi6g02176 615 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 596 IPR044974 GO:0006952
Vivi6g02176 615 SUPERFAMILY "Winged helix" DNA-binding domain 447 547 IPR036390 -
Vivi6g02176 615 Pfam TIR domain 38 206 IPR000157 GO:0007165
Vivi6g02176 615 SMART till_3 37 177 IPR000157 GO:0007165
Vivi6g02176 615 Gene3D - 376 459 IPR042197 -
Vivi6g02176 615 Pfam NB-ARC domain 229 449 IPR002182 GO:0043531
Vivi6g02176 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 469 IPR027417 -
Vivi6g02176 615 Gene3D - 214 368 IPR027417 -
Vivi6g02176 615 FunFam Disease resistance protein (TIR-NBS-LRR class) 34 204 - -
Vivi6g02176 615 ProSiteProfiles TIR domain profile. 36 202 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02176 Vivi-Chr6 97283660 97287576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02176 38 596 WRKY Transcription Factor Family AT4G12020 27.531 1.10e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02176 - - vvo:131641228 795.808