Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02174 ATGGCATTCAGAGAATTTTTAAAGGAAGTAGAAGTTGGCTTTCACGATGACAGCGAAAAGTATGATCAATTTCGCAAACTCTGGGTAGATATGAAATATAGAAAAATTCATTTTAGTGTTTTCAAAGCAAAATTGAAGAGCTTGTTTGAAGGCCATAAATATTTGCTTTTGGAATTCAACAAATTTGTGAGAAGCGAACATAGAATAGAGTGTAAAGATGCATCCGAATTTTTTCAAGCAGTAAAAGTTGTTTTAAAAGATGATGATTATAAAGATTTTATTCAAGTTCTTGAAGATTACAGGAGAAGGAAGATTGATAAAAGGTCTTGTTTGGCAAGACTGAAGGTGCTGCTTAGAGGGCATGCTTATTTAATCAGCCAGTTGAACACCTTACTTCCACCTCGGTTTCGTCTCACACTTTCTTGTTGGGATCAACTTCACTGGGATCTACTTTCTGTTATTTCCCAAAAACTCGATTTTGACGACCTCTTTCAATTTTCTCGTGTCTGCACCAATTGGAGACTTTTTCATAAATCAATAGACAAATCAAGTTTCTTGACATCCCAAGAACCACTGCTTCTTGAGTTTTTTAAGTGTCCTGTTAAGTTACCATATTCCTTTACTAGCCTACCCAATCAAAAAGTTTATCCCTTGAACAAGATGATGCTGAAAATGTTGAGTTACTCTTATGATGGCTCCTTCCCTATCTATGTTACCTGTTCTAGTGGATATTTTGTTATTATAGCTGACAGTTCTTCCATTCTGCTGATCAATCCGTTTACACAAATAAAGAAGAAGGTAAGCTGTCCTTCCACGTTTAAGTCTAAATTCTGCCCTCAACATAATTACCGTGCATTACTTGCTTTTGACAAATCCTCTGAGGAGGAATTTGTTTTGGTATTTTTCTTCGATTACTCCAACAGTTTCTATGTCTATCAATCTCGACATAATGGTTGGGTTACTTCTTCCATTAGCTTCTACCCTAATGAGGACCCTAACAAGGTCCCTTATGATGTCGATGATGGTTTTATCAACCTTTTTGTTGACTTTGTGGCTTTGAACAATATAATATATGTTCTTACTTTGGAGGCCAGGATAGGGGTACTCTGTTTGAATTCCAATTCTGCAAATATTGAATATCTAAATATGGTGAATACCCCCGAATTCGAATTACCATTTGAATTAGAGTTAGAGAGATCATCCTTTAACTTGGCTACATGTGATGAACAACTTTTACTAGTTCGATTAAATTCTGATTCTGAAGATGGTCCTCCGCCAGATAAAAAAGTTTACAAGATAGACTTCTCAACCATGACTTATGTCGAACTCGAAACCTTGGGAGACATTGCATTATTTTATGTTTGTTTGAAAAGCTGTAAGGCATTGAGCAACCCGAATAGATGGGGTTATGAGAGCAACTCTGTGTATCAAGTTTGTAGTCATGGCTGCACCAAAACTTGCACCGTTTATAATTGGGATACAAAATCCAACAAATACATTGCCCCTCCAAATCCTGAAACAAATGGCAGAATCTTTGATTGGTGTTTTAGACATCCAGAATATGAATTAGATGGTTCTCTTTAA 1584 0.3611 MAFREFLKEVEVGFHDDSEKYDQFRKLWVDMKYRKIHFSVFKAKLKSLFEGHKYLLLEFNKFVRSEHRIECKDASEFFQAVKVVLKDDDYKDFIQVLEDYRRRKIDKRSCLARLKVLLRGHAYLISQLNTLLPPRFRLTLSCWDQLHWDLLSVISQKLDFDDLFQFSRVCTNWRLFHKSIDKSSFLTSQEPLLLEFFKCPVKLPYSFTSLPNQKVYPLNKMMLKMLSYSYDGSFPIYVTCSSGYFVIIADSSSILLINPFTQIKKKVSCPSTFKSKFCPQHNYRALLAFDKSSEEEFVLVFFFDYSNSFYVYQSRHNGWVTSSISFYPNEDPNKVPYDVDDGFINLFVDFVALNNIIYVLTLEARIGVLCLNSNSANIEYLNMVNTPEFELPFELELERSSFNLATCDEQLLLVRLNSDSEDGPPPDKKVYKIDFSTMTYVELETLGDIALFYVCLKSCKALSNPNRWGYESNSVYQVCSHGCTKTCTVYNWDTKSNKYIAPPNPETNGRIFDWCFRHPEYELDGSL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02174 527 Pfam F-box domain 143 174 IPR001810 GO:0005515
Vivi6g02174 527 Gene3D Paired amphipathic helix 65 133 IPR036600 GO:0006355
Vivi6g02174 527 Pfam Paired amphipathic helix repeat 88 130 IPR003822 GO:0006355
Vivi6g02174 527 SUPERFAMILY PAH2 domain 68 134 IPR036600 GO:0006355
Vivi6g02174 527 Gene3D - 143 179 - -
Vivi6g02174 527 PANTHER OS06G0113600 PROTEIN 138 494 - -
Vivi6g02174 527 ProSiteProfiles PAH domain profile. 65 135 IPR003822 GO:0006355
Vivi6g02174 527 SUPERFAMILY PAH2 domain 4 66 IPR036600 GO:0006355
Vivi6g02174 527 Gene3D Paired amphipathic helix 4 63 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02174 Vivi-Chr6 97248862 97250719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02174 6 98 WRKY Transcription Factor Family AT4G12020 36.170 2.87e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi6g02174 PAH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02174 - - vvo:131601091 617.461