Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02169 ATGATGAGTAGCGCTTTGACGCGAAAACGTAAAAGGCCAAAGCATAGCCTGTCGGTATTACCAGTGGAAGAAGCTGATCAAAGAGGTAACGCGGAAGGAGGAGGAGGAGGAGGAGTTGCTCTAAAGAAAGGTCCATGGACAAAGGAAGAGGATGAAATTTTGGTAGATCATATTAAGAAGTACGGAGAGGGAAACTGGAAGGCAGTCCAGAAGAATTCAGGACTTGCTCGCGATGGGAAAAGCTGTCGTCTACGATGGTTGAATAACTTGAGGTCAGGACTGAAAAAGGGTCCATTTACTGCTGAAGAAGAGCGCATAATGCTCGAGTTCCGCTATCTGAAGGGAAGCAAATGGGCTCAAATGGCTTCATTGTTGCCTGGACGTACAGATAACGAGATAAAGAACTTTTGGCACACAAGAAGTAGGAAACGGGAACAAGCTGGCTTACCAATCTACCCTGACGAGATATCATCCAAATGTTCGTTAATTGGAAGTCAAGAAATTGATGACATGTTGGCAAATGAATTCAGCCGGCCTGATGAAACAGAAAACTTCAACTTGGATATAACTGACTTGGACCTTAAAGATTTCAAATTCCGCCCAGATATGTTGCCGTCATATTTTGATTCAAAAGATTGCAAACTAATAAGTGACTTGGTTGGATGGCGCTCAGATTTGTCTCATAATACCATATCCACGCGTCCCTCAAAGTGTCCTCGTGTATCCGTAGTGCCGCACCGATATTTGATCGGCAGCAGTAATGATGCTGTCCCGGTAGTAATTGATCAGTATCGCCAATATCCTATGAAGTCTACTCCATGTGATCCAATTCTTAATACCAACCTTCATCATGGATATGATAACCCTTCAACTGGATTTCATGTCACACCAAATATCTCTTCTCCTCAGCCCATATATGGATCCATGAGGTTAGAGCCCCCTTCATTCCAAAATTTACAGACTCAACCGTGTAGCCGGAGCGGCATGTATGTGCCCCAAAATCCCACATTTGAGTCTGTTGACACACCGGTTCAGGCTCCTCTGATTGAGCCTGTTGACACGCTGGTTCAGGCTCCTCTGATTGAGCCTGTTGACACGCCGGTTCAGGCTCCTCTGACACAATGGAATGGACTAGATGACGATCATGGCGCTAATTATGATATTTACGGTGGTGCACTTAATCAGCTACCGGCTTATTCTTCTTTTGACAAAGAAGATAGTTTGAATCAGATAGATTTGGCGCTACCAGATGTCGTGCTTGACTCTGGCTGGCATTGA 1278 0.4476 MMSSALTRKRKRPKHSLSVLPVEEADQRGNAEGGGGGGVALKKGPWTKEEDEILVDHIKKYGEGNWKAVQKNSGLARDGKSCRLRWLNNLRSGLKKGPFTAEEERIMLEFRYLKGSKWAQMASLLPGRTDNEIKNFWHTRSRKREQAGLPIYPDEISSKCSLIGSQEIDDMLANEFSRPDETENFNLDITDLDLKDFKFRPDMLPSYFDSKDCKLISDLVGWRSDLSHNTISTRPSKCPRVSVVPHRYLIGSSNDAVPVVIDQYRQYPMKSTPCDPILNTNLHHGYDNPSTGFHVTPNISSPQPIYGSMRLEPPSFQNLQTQPCSRSGMYVPQNPTFESVDTPVQAPLIEPVDTLVQAPLIEPVDTPVQAPLTQWNGLDDDHGANYDIYGGALNQLPAYSSFDKEDSLNQIDLALPDVVLDSGWH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02169 425 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Vivi6g02169 425 MobiDBLite consensus disorder prediction 1 42 - -
Vivi6g02169 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 145 IPR017930 -
Vivi6g02169 425 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 359 - -
Vivi6g02169 425 Gene3D - 42 95 - -
Vivi6g02169 425 FunFam MYB-related transcription factor 42 95 - -
Vivi6g02169 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 94 IPR017930 -
Vivi6g02169 425 SMART sant 42 92 IPR001005 -
Vivi6g02169 425 SMART sant 95 143 IPR001005 -
Vivi6g02169 425 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Vivi6g02169 425 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Vivi6g02169 425 Gene3D - 98 144 - -
Vivi6g02169 425 Pfam Myb-like DNA-binding domain 46 104 - -
Vivi6g02169 425 CDD SANT 45 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02169 Vivi-Chr6 97101880 97103552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02169 26 359 MYB Transcription Factor Family AT3G11440 34.986 3.38e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g02169 Myb_DNA-bind_6 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02169 K09422 - psat:127085601 455.292