Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02139 ATGATGTTATCTAGAACAATGAATAGAGAAATTGAAGTTCTGTCTCCAGCTTTGTATAATGAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCTAAATGGACTCAAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAGCAGTATAGGGAGCTTGAAGAAGATGTTTGTGTTATTGAAGCAGGTTTGATACCGGTTCCGGGTTATACAACTAGTTCTTTCACATTGGATTGGGCTAATGATGAAGGATATGAGGAGTTCAAGCAGTTTTGCAGTGTTGGTGGGAAGAGAGGTGGTTCGACTCGACCGTCTGAGCAGGAAAGGAAGAAAGGTGTGCCGTGGACTGAAGAGGAGCATAGGCAATTTCTGCTGGGTCTGAAGAAGTATGGTAAGGGGGACTGGAGAAACATCTCTAGGAATTTCGTGACGACAAGGACACCGACTCAAGTTGCAAGTCATGCTCAGAAGTACTTCATAAGGCAAGTTTCAGGAGGGAAGGATAAAAGGAGATCCAGTATTCATGATATCACAGTGGTCAATCTCCAAGAAACAAAGTCTCCTTCATCAGAGCCTTCTCTGGACGATTCGGTTAAGGCTGCAAATCAACCGCTGAATCATAAACCGTTTGGCATGGTTAAGGAGGAATATGTCTGGAAATCGCAAGATGAGGTTACGCCATTTGTTTTCAATTCAACTAAAGGAAACGTGTTCGTGGCACCGTTGTGTGGGATTTCTTCACACGAATCGAAATCACCAAGGCGTAATGCACTTCGCGGCACACACCACGGTTACCAGTTTTCACCGTTTGAAACTATTTTACAAATGCAATCTATGCAGAATCAATGA 930 0.4226 MMLSRTMNREIEVLSPALYNENSNWLFQENNGSKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWANDEGYEEFKQFCSVGGKRGGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITVVNLQETKSPSSEPSLDDSVKAANQPLNHKPFGMVKEEYVWKSQDEVTPFVFNSTKGNVFVAPLCGISSHESKSPRRNALRGTHHGYQFSPFETILQMQSMQNQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02139 309 CDD SANT 141 186 IPR001005 -
Vivi6g02139 309 CDD SANT 34 80 IPR001005 -
Vivi6g02139 309 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Vivi6g02139 309 Gene3D - 27 94 - -
Vivi6g02139 309 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 240 IPR043363 -
Vivi6g02139 309 FunFam Transcription factor SRM1 27 94 - -
Vivi6g02139 309 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Vivi6g02139 309 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Vivi6g02139 309 SUPERFAMILY Homeodomain-like 135 189 IPR009057 -
Vivi6g02139 309 SMART sant 31 83 IPR001005 -
Vivi6g02139 309 SMART sant 138 188 IPR001005 -
Vivi6g02139 309 FunFam transcription factor MYB1R1 140 191 - -
Vivi6g02139 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Vivi6g02139 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Vivi6g02139 309 Gene3D - 140 190 - -
Vivi6g02139 309 MobiDBLite consensus disorder prediction 123 142 - -
Vivi6g02139 309 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Vivi6g02139 309 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Vivi6g02139 309 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02139 Vivi-Chr6 95894484 95896910 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g02139 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02139 - - var:108329798 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02139 6 95894484 95896910 Vivi6g02139 6 95894484 95896910 ECH
Vivi6g02139 6 95894484 95896910 Vivi7g02060 7 82519382 82521152 ECH