Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02116 ATGCTTCAGATTCGGCTTAGCAAGACTTCTGCCTCTGATGGGTCGGCAGGGGTGAAGCAATCACCGGTAGAGACTGTTACAGTTGCGTGCCCTGACCATCTGGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTACACCTTCTACTGGTTCTCTTGTTAGGAATGTGGGTCGTAGATCCCGACGCCAGCTTGGTGAGCGAGTTCATTTCTGCGTTCGGTGTGATTTCCCGATTGCTATTTATGGGAGGCTGAGCCCTTGTGATCATGCTTTCTGTCTCGATTGTGCTAGAAGCGATTCACTGTGCTACCTGTGTGACGAACGAATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAATATGCGCCGCACCTCATTGTCTCAAGTCATTCTTTAAGAAAGCTGAGTTTGAATCTCATATCCATGAGAACCACGCCAATCTTGTTCGATCCAATGTAGATAAAGAAGATGGAAATGAGTCAGAGGCACAAAGTGTTAGGCAACCTGCAGCCTCAGATTCCACTGCTCGAGGCCCCCAAAGGCAAGTCTTTTCTCCGGGTTCAAATTCTCAACCCCATGATCTGGAAGACAGAACTCGTCGGCAGCCAGCAAGAGATCAAACTCCTTTAAGGCCAACAATGCAGCAAAAGCCACCATTTTTTGGCCAACAACAGCATCATCCTTCAGATACAATGTCTGGTTCTGTTGGAGGTATGCAACAGGGCTTTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCTCAGTTTACTGACAGGCCGCAATCAGTTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCAGGACAATCCACCAATATCCCGCCACACTCAAACCCAATGCTGAACCCACCTTTGCCATTCGGTTATCCCTCCTACCCGCAAGACCGAGCTCAGCCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCAGCTTCTGATATGGGTGGAGACCCAAATTCATTAATGGGTTTCCCACAAGGTGGCCCAAATTTTCAAGGAAATTATTCCCAGCAATGGAATGCAGGAGGTGTTCCATTTGAACAAGCACAGGGTGGTGGTATGGTTGTGGATCCAAGGGATACCAAAGGATTACTGGCACCACCACAGCCCATGCACCTCCCACCACCTCCGCCGCCGCCAGCACACATGTTGAAACAGAACAACTATTCTGTTGAGCACGGACAAGATGGTCAGGGTTATGGTTGGCAGCATGATAGTCGTGACAGTTTTAGTGGCCAAGGCTAA 1305 0.4858 MLQIRLSKTSASDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTPSTGSLVRNVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSLCYLCDERIQKIQTVKVMEGILICAAPHCLKSFFKKAEFESHIHENHANLVRSNVDKEDGNESEAQSVRQPAASDSTARGPQRQVFSPGSNSQPHDLEDRTRRQPARDQTPLRPTMQQKPPFFGQQQHHPSDTMSGSVGGMQQGFHQQSFDMQQHPPQEPSQFTDRPQSVGPDNSFPEYPTMHPGQSTNIPPHSNPMLNPPLPFGYPSYPQDRAQPFYAAPYDMPRQDSASDMGGDPNSLMGFPQGGPNFQGNYSQQWNAGGVPFEQAQGGGMVVDPRDTKGLLAPPQPMHLPPPPPPPAHMLKQNNYSVEHGQDGQGYGWQHDSRDSFSGQG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02116 434 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Vivi6g02116 434 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Vivi6g02116 434 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Vivi6g02116 434 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Vivi6g02116 434 MobiDBLite consensus disorder prediction 151 165 - -
Vivi6g02116 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Vivi6g02116 434 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 424 IPR040383 GO:0016567|GO:0061630
Vivi6g02116 434 MobiDBLite consensus disorder prediction 209 278 - -
Vivi6g02116 434 MobiDBLite consensus disorder prediction 166 195 - -
Vivi6g02116 434 MobiDBLite consensus disorder prediction 373 434 - -
Vivi6g02116 434 MobiDBLite consensus disorder prediction 151 278 - -
Vivi6g02116 434 MobiDBLite consensus disorder prediction 388 403 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02116 1 430 C2H2 Transcription Factor Family AT5G01160 44.098 4.58e-105 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02116 K15685 - gmx:100817582 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02116 6 95162956 95170053 Vivi6g02116 6 95162956 95170053 ECH