Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02113 ATGAGGTGCAGTAGTCACAAAGGGTTTTCTGAGAATTCACAAGGTGAGAGGATTTGTAGGATTTGTCATCTGGCTTTTGGACCTGCGTCAGATGCAGCAATTATTGAAAGTGTGAGCGCTACGAGTGGAGATTTTATTCAACTTGGTTGCGTGTGTAAAGACGAGCTCGGCATTGCTCACGTTTATTGTGCTGAAGTGTGGTTCAAGCTAAAGGGAAATAGATTATGTGAAATATGTGGCGAGACTGCAAAGAATGTCTCGGGTGTTACTACTAACGGAGTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAACAGCGGTAACTCATCGCGCAGGTTTGGTGGATGCTGGCGAGCACAGCCGTATTGTAATTTCTTGATGGCGTGCCTGCCTATCTTAGTCTATATGTCCAAGGTGGATGGGAAATTCAATTTTAGAGTTGTTTTTGTGGACGCTGGAGTTACACAAATTGACATTGAAACTAAGACGATGAAAGATGAGCAGAAAATGAGAGAAGCACAGACAAGAGCAATATCAGAGCATGGAGAGTTAGCACTAATTACAGTTGAAGGTCCTCAATCTTCTACAGAAGAAAGAATACCATTGAGGCCACCAATGCTGCAGAGCTTTGTTATAGCAATACTTGCACGAAAGTAG 660 0.4273 MRCSSHKGFSENSQGERICRICHLAFGPASDAAIIESVSATSGDFIQLGCVCKDELGIAHVYCAEVWFKLKGNRLCEICGETAKNVSGVTTNGVMEEWNDRRFMDNSGNSSRRFGGCWRAQPYCNFLMACLPILVYMSKVDGKFNFRVVFVDAGVTQIDIETKTMKDEQKMREAQTRAISEHGELALITVEGPQSSTEERIPLRPPMLQSFVIAILARK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02113 219 Pfam RING-variant domain 19 79 IPR011016 GO:0008270
Vivi6g02113 219 ProSiteProfiles Zinc finger RING-CH-type profile. 11 86 IPR011016 GO:0008270
Vivi6g02113 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Vivi6g02113 219 PANTHER ZINC FINGER, RING-CH-TYPE 9 144 - -
Vivi6g02113 219 SMART ringv_2 18 80 IPR011016 GO:0008270
Vivi6g02113 219 SUPERFAMILY RING/U-box 14 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02113 Vivi-Chr6 94765226 94768927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02113 13 148 C3H Transcription Factor Family AT5G05830 39.716 4.41e-24 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02113 - - vvo:131609344 451.055