Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02086 ATGGGTGGTGTTGCATGGACTGAAGAAGAGGATCACTTGCTTAAGAAGTGTATACAGCAATATGGTGAAGGAAAGTGGCATAGGGTTCCTCTATTGGCTGGTCTAAACAGATGCCGAAAGAGTTGTAGGCTAAGATGGTTGAACTATCTTCGTCCTAACATCAAAAGAGGAAACTTTGCTGAGGAGGAAGTGGAAATGATTGTCAAACTCCACAAATTGTTAGGCAACAGGTGGTCCTTAATTGCGGGAAGACTACCAGGAAGAACAGCGAACGATGTTAAAAACTATTGGAACTGTCACCTAAGCAAGAAACTAAACGCTATAGAAGCCGATCAAGATGGCTCACAATTATCCAAAGATGTTCAAATCATTAGGCCACAACCAAGAACCATCGCTTCAAGCTCATCGAAAAAAAGAAGCCAAGGAGAGTCACAAACCGACCAAGTTATAGTTCAACAAGAGAAAGACACAACAACATTTGATGCTGATGGAAAGAATCATATGCTTGAAACACAACAAGACATGATGATGTATTCATGCTTGGACCAACAAGGTATGGATGGTGGTGAGTTTCCAATGGATTTTCAGTTAGAAGGATTTGAAACTATGGTAAATGGAGGAGAAGGTTGTAGTAGTAGTAGTCAATGGAATTGGGATGATTTGCTCTTAGATATGGATATGTATAATGATTTTTCTTCTTAG 702 0.3989 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNAIEADQDGSQLSKDVQIIRPQPRTIASSSSKKRSQGESQTDQVIVQQEKDTTTFDADGKNHMLETQQDMMMYSCLDQQGMDGGEFPMDFQLEGFETMVNGGEGCSSSSQWNWDDLLLDMDMYNDFSS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02086 233 SMART sant 2 52 IPR001005 -
Vivi6g02086 233 SMART sant 55 103 IPR001005 -
Vivi6g02086 233 Gene3D - 4 55 - -
Vivi6g02086 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vivi6g02086 233 MobiDBLite consensus disorder prediction 118 162 - -
Vivi6g02086 233 MobiDBLite consensus disorder prediction 118 157 - -
Vivi6g02086 233 Gene3D - 57 158 - -
Vivi6g02086 233 FunFam Myb transcription factor 3 55 - -
Vivi6g02086 233 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Vivi6g02086 233 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Vivi6g02086 233 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Vivi6g02086 233 CDD SANT 58 101 IPR001005 -
Vivi6g02086 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vivi6g02086 233 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vivi6g02086 233 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Vivi6g02086 233 CDD SANT 5 50 IPR001005 -
Vivi6g02086 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02086 Vivi-Chr6 93604871 93606859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02086 5 136 MYB Transcription Factor Family AT1G66370 59.859 1.27e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g02086 Myb_DNA-binding 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02086 K09422 - gmx:100798101 334.339