Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02077 ATGTCATCTTTACAGATGACCCATGTTGATTTAGAGCAAGGAAATCATCATCATGCTCCTCTTCATCATCATCATCCTAGTTGTTCTGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGTTTATGTTTCTCTGATGCTGATGATGGTTCAAGCTATTCTAGGTTCTACTCAACAAATGGTGGTTCATATGATGATTACTCTTTTGCTTGTGTTTCTGATGATCCTGAACTTGGTGGTGGTGGTGGTGTTGTTGATTCTGCTAGAGTTTCTTCTGTCACTGATTGTTCTGTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTGGCTAAAGTTGAGAAGGATTGTAGGATCTGTCACATGGGTTTGGAAAGTGAGAGCCATGAATCTGGTCTTCCTATTGAATTGGGGTGTTCTTGTAAAGAAGATTTAGCTGCTGCTCACAAAAACTGTGCTGAAGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCACTCGGTCGCGCGGAATGTTTATAGTCCAAACGACGATTTGACAGAGCATGTGATCGACAGTAACAATACCACCGCATCATCCACGCTCTCTACCGCTGCTCCTACGCCAGAAACTCAAAGATTTTGGCACGGCCATCGCTTCTTGAATTTTCTCCTTGCTTGTATGGTTTTCGCATTCGTCATATCATGGCTTTTCCACTTCAACATGCCATCATCTTAG 726 0.4215 MSSLQMTHVDLEQGNHHHAPLHHHHPSCSVVGSDVSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDDPELGGGGGVVDSARVSSVTDCSVEIRIGVPEIKVHLAKVEKDCRICHMGLESESHESGLPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSPNDDLTEHVIDSNNTTASSTLSTAAPTPETQRFWHGHRFLNFLLACMVFAFVISWLFHFNMPSS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02077 241 ProSiteProfiles Zinc finger RING-CH-type profile. 109 175 IPR011016 GO:0008270
Vivi6g02077 241 SUPERFAMILY RING/U-box 114 172 - -
Vivi6g02077 241 Pfam RING-variant domain 117 168 IPR011016 GO:0008270
Vivi6g02077 241 SMART ringv_2 116 169 IPR011016 GO:0008270
Vivi6g02077 241 CDD RING_CH-C4HC3_MARCH 117 169 - -
Vivi6g02077 241 PANTHER ZINC FINGER, RING-CH-TYPE 15 240 - -
Vivi6g02077 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 178 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02077 Vivi-Chr6 93302870 93306220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02077 83 241 C3H Transcription Factor Family AT5G05830 59.259 1.29e-63 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02077 - - gmx:100808666 364.77