Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02021 ATGCGTGTGTGTTGGAAACTACACAATTTCAATTCACGTATCATCATCATCATCACTTTCATTATTACTATATCTTTTCGTTTCACAATCACCATCACTTCACTTCCATCACCATCTCTCTCTCTTTCTCTCTCTACTTCAAAACCAAACCCTTCTTTTTTTCCATTCTTTGTTTTTTTATACACCATGGCTGAAGGTTTTGAACACTATCATATCCCACAACAAAGCAGAAGAGAGAAGCTCCGATTCTTATCTCAAAACCAACCATCTTTCATAGAATCTTCTTCAACTACCCTAAACCCTAGTTCAACACCTTTACCTTCTCTCTACGACCCTTCCTTCATTTCACCAGTTTTCTCACCTTCCACCAACCAAACAATTGAGGCTATCACCACTAACCCTTTTCTCTATCAAACTTACAACGACGGTTGCAACACTAACACTAACAGTGAAGTCATGTTGCTGAAATCTGAACCTTTGTCTTTGTCTTTATCATCGTCTCAACAGAATAACCAGGTTCAGATGAGTGTGCATCACCCTTTGGAGGTTAATAATCTTCAGAGATATGGGTCTGTTGTTGTGAATGGTGGTGGTGAGGTTTCGAGGAACACGGTTCCGTTGGGACCGTTTACGGGGTATGCGTCGGTTTTGAAGGGGTCGAGGTTTTTGAAACCTGCGCAGCAATTATTGGATGAGATGTGTGATGTTGGGGCGCGTGTTGAGAAGATTGCTTCTGCTGCTGATTTGTCGTTGATGGAGAATTCTGTTCAGGAGAGGAATGGAAGTGTTGATGATGGAAATGATGTTGAGGGTAGGAAGAACAAGTCTAGACTATTAAACGTGCTAGATGAGATTTGCAGGAGATACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCATTTGAATATGTTGCCGGCCTCGGAAACGCTGCTCCATATGCAAGTTTGGCTATAAATGCCATGACCAAACATTTTAGAGGCTTGAAGAATGTGATTACTAACCAGCTTCAGTTTATCGGTAAGTCGAATTTTCAGATAAACAATACAAAGGACAACGAATCCCCAAGGTTTTGCAACAGCGACAGAAGCCCTTACAGTCGAAGGCCTGAGTTTCTCGAACACGTCCAACAACCTATTTGGCGACCACAGCGAGGCCTCCCTGAGCGTGCTGTGAGTGTTCTCAGGGCATGGTTGTTTGAACACTTTCTGCACCCTTATCCTACCGATACCGACAAGCTAATGCTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTCTCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATTCACATGCTTGAATCACAACAATCTCTAAAGGAACCATCACAAAGAGAAGAACATAGCCGGAAAAATTTAAGTGATAACAACATTGCCGAGAATCAATCTACCTCCACAGACAAGTTCCACGACGACGGCTCTTATAAACGAATGAGAAACGAGCTTCACAATATACCGGCGGCGATGAATCAGAGCATTGCAAGCAATCAACAAGTCGGTAGTGTTGGAGTGAGCATGATGAATAACGGTGCAACAAACAATGGTGTCTCTCTCACACTTGGCCTACATCAAAACCATGGAATCGGGTTGTCCGAGCCCTTCGACATGAGTGCTGCTCAACGCTACGGTCTTGCAGTTCAACCCGATAGCTACGTCGCGAGTAGCTTTCAGTTGCAGAATCGACAGTTTGGGAGGGATTTTATTACAGGCCAACTTTTGCATGACTTTGTAGGGTGA 1788 0.4312 MRVCWKLHNFNSRIIIIITFIITISFRFTITITSLPSPSLSLSLSTSKPNPSFFPFFVFLYTMAEGFEHYHIPQQSRREKLRFLSQNQPSFIESSSTTLNPSSTPLPSLYDPSFISPVFSPSTNQTIEAITTNPFLYQTYNDGCNTNTNSEVMLLKSEPLSLSLSSSQQNNQVQMSVHHPLEVNNLQRYGSVVVNGGGEVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEMCDVGARVEKIASAADLSLMENSVQERNGSVDDGNDVEGRKNKSRLLNVLDEICRRYRQYYQQIHAVITSFEYVAGLGNAAPYASLAINAMTKHFRGLKNVITNQLQFIGKSNFQINNTKDNESPRFCNSDRSPYSRRPEFLEHVQQPIWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSLKEPSQREEHSRKNLSDNNIAENQSTSTDKFHDDGSYKRMRNELHNIPAAMNQSIASNQQVGSVGVSMMNNGATNNGVSLTLGLHQNHGIGLSEPFDMSAAQRYGLAVQPDSYVASSFQLQNRQFGRDFITGQLLHDFVG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02021 595 Gene3D - 385 447 - -
Vivi6g02021 595 FunFam BEL1-like homeodomain protein 9 385 447 - -
Vivi6g02021 595 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 136 467 - -
Vivi6g02021 595 MobiDBLite consensus disorder prediction 457 471 - -
Vivi6g02021 595 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Vivi6g02021 595 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Vivi6g02021 595 MobiDBLite consensus disorder prediction 451 490 - -
Vivi6g02021 595 SMART prehox3 211 336 IPR006563 -
Vivi6g02021 595 Pfam Associated with HOX 216 335 IPR006563 -
Vivi6g02021 595 SMART HOX_1 382 446 IPR001356 GO:0003677
Vivi6g02021 595 SUPERFAMILY Homeodomain-like 384 449 IPR009057 -
Vivi6g02021 595 CDD homeodomain 382 443 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02021 Vivi-Chr6 91014583 91017816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02021 63 595 Homeobox Transcription Factor Family AT5G02030 43.760 2.30e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi6g02021 POX 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02021 - - vvo:131611865 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02021 6 91014583 91017816 Vivi6g02021 6 91014583 91017816 ECH