Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02013 ATGAATATTTTTGAATCATCATTTACCGAGTTGAACTACGGCACACACCAACACTCTGATACTTCTTCTTCGTCAGAAACAAGTTCCTCAAACCATAATAATTCAGAAACGTTTTTGGCATCTGAGAGACCAAAGAAGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGACACCCAGTGTACCGAGGAGTACGAAAGTGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAAGCGTAACAAATGCAACAACTCAAGGATTTTGCTTGGAACTAATCCCACGCAAGAAATGGCCGCACGTGCACATGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCCGCATGGCGGTTGAGGTTGCCGGAATCCAATGACGGAGACGAGATAAGGAAAGCTGCAATGGAAGCTGCTGAGTTAGTTTCTGTTGAGGACAACAACCAGTGTCAGGTTGGTGTTGGTGATGGAGTGGTCATAGAACAAGTTCCAACGGAATTCGACGATATGCATGATTTGCTCATGAGTATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCCATCACAGATTATGCCACTAACTGGTTTGACATGGAGATGTTTGACACTCAAGTCTCATCATTGTGGAATTTCGAAACACAGTATTAA 672 0.4301 MNIFESSFTELNYGTHQHSDTSSSSETSSSNHNNSETFLASERPKKRTGRRVFKETRHPVYRGVRKWNNNKWVCEMRVPKRNKCNNSRILLGTNPTQEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDGDEIRKAAMEAAELVSVEDNNQCQVGVGDGVVIEQVPTEFDDMHDLLMSIANEPLRSPSPSITDYATNWFDMEMFDTQVSSLWNFETQY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02013 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 218 IPR045277 GO:0003700
Vivi6g02013 223 CDD AP2 61 123 IPR001471 GO:0003700|GO:0006355
Vivi6g02013 223 MobiDBLite consensus disorder prediction 1 38 - -
Vivi6g02013 223 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vivi6g02013 223 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Vivi6g02013 223 Pfam AP2 domain 59 113 IPR001471 GO:0003700|GO:0006355
Vivi6g02013 223 SMART rav1_2 60 127 IPR001471 GO:0003700|GO:0006355
Vivi6g02013 223 SUPERFAMILY DNA-binding domain 60 123 IPR016177 GO:0003677
Vivi6g02013 223 Gene3D AP2/ERF domain 60 122 IPR036955 GO:0003700|GO:0006355
Vivi6g02013 223 ProSiteProfiles AP2/ERF domain profile. 60 121 IPR001471 GO:0003700|GO:0006355
Vivi6g02013 223 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02013 Vivi-Chr6 90450422 90451109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02013 33 219 AP2-EREBP Transcription Factor Family AT1G12610 45.714 2.32e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g02013 AP2 7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02013 - - psat:127120702 336.65