Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01978 ATGCATCAAAACTATCTTCAACCACTTCCATTGCTAAGTAGCTTCTTAGATTCAATTCCTCAACAATCCTTTCAACAATCATGTTTGAATCAAGCTGAAGATCTCACAGTGGCCTTACATATTGGTCTCCCTTCTATTGAAACACCAACTCAGAATGTTCCAAACAATTATTGGATACCAAATGAAGAACAAATTCGCATCGGTTTCAGTCATTTTTCTTGTTCCGTTTGTCACAAAACTTTCAACCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGTTCGCAGTATCGAAGAGGACCCGGCTCGCTGAAAAGAACTCATCCGCGACCGTTGTTGGACATTCCATGCTATTGTTGTTCAGAGGGATGTAAGAACAACATTGAGCATCCAAGAGCTAAGCCATTGAAAGATTTTAGAACATTGCAGACACATTACAAAAGGAAGCACGGTTCGAAAAGCTTTACTTGTAGAAAATGTGGAAAGTGTTTGGCAGTGAAAGGTGATTGGAGAACTCATGACAAGAACTGTGGGAAGCGTTGGCTTTGTATCTGTGGTTCAGATTTCAAACACAAGAGGTCATTGAAAGATCATGTCAATGCTTTTGGATTAGGTCATGGTCCTTTTTCTTCTTCCTCTGATGGCATTTGA 654 0.4037 MHQNYLQPLPLLSSFLDSIPQQSFQQSCLNQAEDLTVALHIGLPSIETPTQNVPNNYWIPNEEQIRIGFSHFSCSVCHKTFNRYNNLQMHMWGHGSQYRRGPGSLKRTHPRPLLDIPCYCCSEGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKSFTCRKCGKCLAVKGDWRTHDKNCGKRWLCICGSDFKHKRSLKDHVNAFGLGHGPFSSSSDGI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01978 217 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Vivi6g01978 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Vivi6g01978 217 PANTHER ZINC FINGER PROTEIN WIP2 21 211 IPR043584 GO:0003700|GO:0010468
Vivi6g01978 217 SMART c2h2final6 119 151 IPR013087 -
Vivi6g01978 217 SMART c2h2final6 72 94 IPR013087 -
Vivi6g01978 217 SMART c2h2final6 156 176 IPR013087 -
Vivi6g01978 217 SUPERFAMILY beta-beta-alpha zinc fingers 43 93 IPR036236 -
Vivi6g01978 217 Gene3D Classic Zinc Finger 69 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01978 Vivi-Chr6 88737075 88737802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01978 1 212 C2H2 Transcription Factor Family AT1G34790 57.430 3.19e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g01978 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01978 - - vvo:131619172 462.225