Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01923 ATGTCTTATAGCTATTTCCCCATTACTTTCCAAAGAAAGATGGAATACACTCAAAACCCTAATAAATCTGAGCAAATAAGATGGAACTCAGATGATATAGGTGGTCCAGCACAAGCTAGATCCTATTCTTGCACTTTTTGCAAGAGAGGGTTTTCAAATGCACAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCCAAGCTCAAACAACAATCTTCTGAAGAAAACTTGCTTTCTTTGGACATATCAACTAAGAACACAATTGACCATGTTGATTTGGAAGAGAATCATGAGACTCAAAAAGGAAAGTTGGTTACAACCAAAGAACTTCCTAGAAGTTCTTCATTTGTTGATATAAAGGGAAGTGGTGGGGTGACACATAGGATTGAAGAGAATAAATGTGATTTAGACCTTGAACTTAGGTTAGGTTATGAGCCAATAGGTTCTTCATCATTGAGCACTCGATCATTCTTTTGA 486 0.3704 MSYSYFPITFQRKMEYTQNPNKSEQIRWNSDDIGGPAQARSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQQSSEENLLSLDISTKNTIDHVDLEENHETQKGKLVTTKELPRSSSFVDIKGSGGVTHRIEENKCDLDLELRLGYEPIGSSSLSTRSFF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01923 161 PANTHER OS07G0101800 PROTEIN 22 148 - -
Vivi6g01923 161 Gene3D Classic Zinc Finger 34 111 - -
Vivi6g01923 161 SUPERFAMILY beta-beta-alpha zinc fingers 39 68 IPR036236 -
Vivi6g01923 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vivi6g01923 161 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01923 Vivi-Chr6 86539377 86540146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01923 14 150 C2H2 Transcription Factor Family AT3G09290 39.535 2.75e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g01923 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01923 - - mtr:25498560 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01923 6 86539377 86540146 Vivi6g01923 6 86539377 86540146 ECH