Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01872 ATGGCGAAAACCAAGGGTTTCAACGTTCTCCACAACCTCATCCACATTGCTACCGAAATCTCTCAAATCTCCACCTTCCATTCCCTCATCAAAACGCAATGCTTCGATCTCAGCCGTAGGATCACTTTCCTCATTCCCCTCTTTCAACACCTCGTCAACGACGCCGTTTTCGTTCCTTACGAAGCTCTCGTTTCGCTTCAAGAAGCTTTTCTTTCTGCTAAGGATTTGCTTCGGTTTTGTTCTCAGTCAAGCCAGCTCTACATGATATTGGAGAGGGAGAAAATTAAGTGCAAATTCACAGATCTGGCTTCGCATTTTGAACAAGCTATAAACGAGATTTCGTATGACAAAATTGATATTTCTGAGGAGTTAAAGGAGCAGATCGCACTTGTGGCTTCCCAGTTTCGAAGGGCCAAAGAACATTTTGTTCCACCTGGTCTGGAGCTTTATGAGCACCTGTTGTCTATCTATAATCAGAGCTGTGATGTGACTGCTGAATCTGATGCACTACGTTTAATATGTGAAAAACTACAATTTGTGAGTGCTGAAGATATCGAAAAAGAGTCACTTGCTCTTCATAAGGTGATTGTTGATGGGGGTGGTTATTATGAGAAAAGCTTGCAGGGATTGTCAGCGGTGCTGAGAAAAATTGATGATTTTTTGTTCAAGGATTCTGAAAATAAGGGAGATGATTGTGTTGAGAAACGCCCACAGGTGTTGTCAAGTGGGGATTTGCCTCCTCAAACTAGTGAGCTATGTGCGAACTTATGTTGTCAGTCACCGGTTGTGCCGGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTCATCATTTCGACAGGGCAGACATATGAACGAACTTGCATTAGGAAATGGCTTGATACAGGGCATCAAACATGTCCCATCACTCGGCAGATTGTTTCGAGCCCCATTCTCATACCTAATCATGTTTTATACAACCTGATATCAAATTGGTGCGAGGCAAACGGAGTTGAACCACCTAAAAGATTAGAAAGTTTACGGCTCTACAAGCAAACATCAGATGGCTCCTCTGAATTAATAGACCTTGATTCCTTAATGAGGAAACTAATTTCCAGATACATTGAGGATCAGCGATGTGCAGCAGGAGAGCTCCGTCTTCTTGCCAAACACAATAGCGAAAATCGAAAGTTGATTGCTGAAGCTGGGGCTATACCCCTCCTCACTGATCTCCTCTTTACTCCTGATGCTGGAACCCAGGAGCATGCAGTTACCGCTCTTCTCAATCTATCTATCTACGAGGAGAACAAAGAGCGCATCATGGCTTCTGATGCTGTGCCGGGAATCCTTTACGTGCTAAAAAATGGTAGCATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAACCTCTCTTCAGTAGATGAGAACAAAATGATAATCGGTGCATCTGGAGCAATCCAGGCTCTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGGCTGATGCTGCGTCAGCTTTATTCAAACTGTGTATATACCAAGGGAACAAAGGACGTGCTGTAAAGGCTGGTATTGTACCCAAATTGATCGAAATGTTAACAGAACCAGGTGGGGAGATGAGGGGTGAGGCATTGGCAATACTAGCTGTAATAGCTAGCCACCCGGACGGAAAAGCAGCAATTGGATCTATGAATGCTCTTCCCATTCTGGCTGAATTAATCATTAATGGATCTTACAGGAACAAAGAGAATGCGACCTCGGTGCTTGTATACATCTGTAAAGGAGATCCACTGTACCTACCGATTGTCGCTTCACATGAAGTGATCAATCCTCTCATGGAACTGGCCGCAAATGGCTCAGAAAGGGGCAAGCGGAAAGCCGAACAGCTTCTTGAGCTGTTAGGCAATTAG 1908 0.4429 MAKTKGFNVLHNLIHIATEISQISTFHSLIKTQCFDLSRRITFLIPLFQHLVNDAVFVPYEALVSLQEAFLSAKDLLRFCSQSSQLYMILEREKIKCKFTDLASHFEQAINEISYDKIDISEELKEQIALVASQFRRAKEHFVPPGLELYEHLLSIYNQSCDVTAESDALRLICEKLQFVSAEDIEKESLALHKVIVDGGGYYEKSLQGLSAVLRKIDDFLFKDSENKGDDCVEKRPQVLSSGDLPPQTSELCANLCCQSPVVPEEFRCPISLELMKDPVIISTGQTYERTCIRKWLDTGHQTCPITRQIVSSPILIPNHVLYNLISNWCEANGVEPPKRLESLRLYKQTSDGSSELIDLDSLMRKLISRYIEDQRCAAGELRLLAKHNSENRKLIAEAGAIPLLTDLLFTPDAGTQEHAVTALLNLSIYEENKERIMASDAVPGILYVLKNGSMEARENAAATFFNLSSVDENKMIIGASGAIQALVTLFCEGSQRGKADAASALFKLCIYQGNKGRAVKAGIVPKLIEMLTEPGGEMRGEALAILAVIASHPDGKAAIGSMNALPILAELIINGSYRNKENATSVLVYICKGDPLYLPIVASHEVINPLMELAANGSERGKRKAEQLLELLGN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01872 635 Gene3D - 5 116 IPR036537 GO:0007166
Vivi6g01872 635 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Vivi6g01872 635 CDD MLKL_NTD 31 136 - -
Vivi6g01872 635 CDD RING-Ubox_PUB 264 316 IPR045210 -
Vivi6g01872 635 Gene3D - 495 633 IPR011989 -
Vivi6g01872 635 Gene3D - 345 494 IPR011989 -
Vivi6g01872 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Vivi6g01872 635 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Vivi6g01872 635 SMART arm_5 389 429 IPR000225 GO:0005515
Vivi6g01872 635 SMART arm_5 553 593 IPR000225 GO:0005515
Vivi6g01872 635 SMART arm_5 471 511 IPR000225 GO:0005515
Vivi6g01872 635 SMART arm_5 512 552 IPR000225 GO:0005515
Vivi6g01872 635 SMART arm_5 430 470 IPR000225 GO:0005515
Vivi6g01872 635 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Vivi6g01872 635 FunFam RING-type E3 ubiquitin transferase 345 635 - -
Vivi6g01872 635 SUPERFAMILY ARM repeat 360 631 IPR016024 -
Vivi6g01872 635 PANTHER U BOX DOMAIN-CONTAINING 28 633 - -
Vivi6g01872 635 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Vivi6g01872 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Vivi6g01872 635 SUPERFAMILY RING/U-box 263 339 - -
Vivi6g01872 635 FunFam RING-type E3 ubiquitin transferase 263 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01872 Vivi-Chr6 83687065 83693134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01872 11 631 U-box Gene Family AT3G46510 50.400 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01872 - - tpra:123888033 925.62