Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01859 ATGGCATTTCTCAAACCCCTTATCTCTCTCTACATTCCCTTCCTTTTCCTCTCCTGTTTCCTCACCAAAGCCTCAACAAAATCCACACTTCCTCCAACCACATCCTCTGATGTTCAACTCATCCTATTCAAAATCAAACCCTCCCTCCAAGGCACCACAGAGAACCTCCTCCTCTCCTCATGGAACACCTCAACTCCTCTCTGTCAATGGCGAGGCCTCAAATGGGTCTTCACCAACGGTTCATCTCTCTCATGTACTGACCTCTCTTCACCACAATGGAACAATCTTTCCTTCTCCAAAGACCCTTTTCTCCACTTGCTGTCTCTTCAACTCCCCTCCGCAAATCTCTCCGGCTCTCTCCCCAGAGAGCTTGGCCAGTTTCCTATGCTGCAGAGTCTTTACCTTAACATCAATTCCTTGAGTGGAACCATTCCTCTTGAGCTTGGTTACGCCTCTTCACTCTCTGATATTGATTTGAGTGATAACCTTTTGGTTGGTGACCTTCCACCTTCTGTGTGGAACTTGTGTGATAAGCTTGTTTCTCTTAAGGTTCATGGAAATTCATTATCTGGGTCTGTTTCAGAACCTGCATTACCTGATTCATCTTGTAAGGTTTTGCAGTTTCTTGATTTGGGTGGGAATAGATTTTCCGGTGATTTTCCTGATTTTGTTACTAAATTTGGTGCCCTTAAACAGCTTGATTTAGGGAGTAATATGTTTAGTGGTGCAATTTCTAATGGTTTGGTTGGACTTAGGTTGGAAAAATTGAATCTTTCTCATAATAATTTTAGTGGGGTTGTTCCGGTTTTCGGGGAATCGAAATTCGGTGTGGACTGTTTTGAAGGGAATAGTCCTGATTTGTGTGGTCCACCTTTGGGAAGTTGTGATAAGAATTCTTCATTGAGTTCTGGTGCTGTTGCAGGGATTGTTATTAGTCTTATGACAGGTGCTGTTGTTTTGGCTTCTTTGTTGATTGGTTATATGCAAAACAAGAAGAAAAAGGGGAGCGGAGAGAGTGAGGATGAGTTGAATGATGATGAAGAGGACGAAGAGAACGGCGGTGGTGGTGGTGGTGGTTCGGTTGGTGGAAATGGTGAAGGGAAGCTTATGTTGTTTGCTGGTGGTGAGAATTTGACACTTGATGATGTGTTGAATGCGACGGGGCAAGTGATGGAGAAGACGTGTTATGGAACTGCTTATAAGGCTAAGCTTGCGGATGGTGGGACGATTGCGTTGAGGTTGTTGAGGGAAGGGACTTGCAAGGATAGGAGTTCGTGTTTGGCGGTTATTAAACAGTTGGGGAAAATTCGACATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAAGGGAAAAGAGGGGAGAAGCTGCTTATTTATGACTATTTGCCTCTCAGAACTCTTCATGAACTTTTGCATGAAATTAAAGCAGGAAAACCAGTGCTAAACTGGGCAAGGCGACACAAGATTGCATTAGGTATAGCAAGAGGACTAGCATATCTTCATACGGGACTCGATGTTCCCATAACTCACGCAAACGTAAGATCCAAGAACGTGCTAGTAGACGACTTCTTCGTTGCCAGGATCACTGACTTCGCGCTCGACAAACTAATGATACCTTCCATAGCAGATGAAATGGTGGCACTCGCGAAAACAGACGGGTACAAGGCACCAGAGCTTCAAAGAATGAAGAAATGCAACTCAAGGACCGACGTCTACGCCTTCGGTATACTACTTCTTGAGATCTTAATCGGTAGGAAGCCTGGTAAGAACGGAAGAAGCGGCGAGTATATAGATTTACCTTCAATGGTGAAAGTAGCTGTCTTGGAGGAAACTACAATGGAGGTTTTCGACGTGGAGCTCTTGAAAGGGATAAGAAGTCCAATGGAAGACGGGCTGGTTCAGGCGTTGAAGCTGGCGATGGGATGCTGTGCACCGGTGGCGTCGGTTAGACCGAGCATGGAGGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCAACTGAGACAAGAAGTGGAAGTATTACACCATTTTGA 2058 0.4485 MAFLKPLISLYIPFLFLSCFLTKASTKSTLPPTTSSDVQLILFKIKPSLQGTTENLLLSSWNTSTPLCQWRGLKWVFTNGSSLSCTDLSSPQWNNLSFSKDPFLHLLSLQLPSANLSGSLPRELGQFPMLQSLYLNINSLSGTIPLELGYASSLSDIDLSDNLLVGDLPPSVWNLCDKLVSLKVHGNSLSGSVSEPALPDSSCKVLQFLDLGGNRFSGDFPDFVTKFGALKQLDLGSNMFSGAISNGLVGLRLEKLNLSHNNFSGVVPVFGESKFGVDCFEGNSPDLCGPPLGSCDKNSSLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKKKGSGESEDELNDDEEDEENGGGGGGGSVGGNGEGKLMLFAGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGTCKDRSSCLAVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHELLHEIKAGKPVLNWARRHKIALGIARGLAYLHTGLDVPITHANVRSKNVLVDDFFVARITDFALDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGRKPGKNGRSGEYIDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01859 685 SUPERFAMILY Protein kinase-like (PK-like) 394 661 IPR011009 -
Vivi6g01859 685 MobiDBLite consensus disorder prediction 666 685 - -
Vivi6g01859 685 Pfam Protein tyrosine and serine/threonine kinase 389 660 IPR001245 GO:0004672|GO:0006468
Vivi6g01859 685 MobiDBLite consensus disorder prediction 333 362 - -
Vivi6g01859 685 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 664 IPR046959 -
Vivi6g01859 685 Gene3D Transferase(Phosphotransferase) domain 1 464 677 - -
Vivi6g01859 685 FunFam Leucine-rich repeat receptor-like protein kinase 203 295 - -
Vivi6g01859 685 SUPERFAMILY L domain-like 68 269 - -
Vivi6g01859 685 Gene3D Ribonuclease Inhibitor 36 296 IPR032675 -
Vivi6g01859 685 MobiDBLite consensus disorder prediction 660 685 - -
Vivi6g01859 685 Gene3D Phosphorylase Kinase; domain 1 372 461 - -
Vivi6g01859 685 ProSiteProfiles Protein kinase domain profile. 385 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01859 685 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Vivi6g01859 685 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 102 193 - -
Vivi6g01859 685 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01859 Vivi-Chr6 82875870 82878615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01859 4 685 Receptor kinase-like Gene Family AT3G24660 71.157 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi6g01859 PK_Tyr_Ser-Thr 9.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01859 - - gmx:100814814 1101.66