Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01854 ATGAACTCACTATCTTACTTCTTCCATCTTCTCCTCCTCTTCACACTTCTTCTCCCACTTTCCTCTTCAACCAATGAACTCACTACCCTACTTTCATGGACACAACCCTCCAGAAACCACCCCACACCCCCTTTTTCCAACATAAACCCCCTAGACACAAATCCATGCAAATGGTCATTCATAACTTGCTCTTCACAAAACCTTGTAACTGAAATCACCATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTCCAAACATCTCTTCATTTTCCAGCCTTCAAAAGTTAGTTATTTCAGGTACAAACCTCACTGGAACTATTCCAGCTGAAATAGGTAACTGTCTTAACCTAATCACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTTCAACTATTGGAAACCTAAAAAAACTTGAAAACTTGATTCTTAACTCTAACCAATTATCTGGTTCAATTCCAATTAGGGTTGGTGATTGTGTTAGTCTCAAAACCCTAGATATTTTCGATAATAATCTCACCAGAAACCTTCCGCATGAATTAGGGAATCTTTTAAATCTTGAAGTTATAAGAGCTGGTGGAAACAAAGACATTGTAGGGAAGATTCCAGAAGAGTTAGGTGAATGCAGGAATTTAACTGTTCTAGGACTTGCAGACACTAGAATTTCTGGTTCAATACCTAGTTCATTAGGTAAGTTAACATTGCTTCAAACTATATCTATTTATAGTACTTTGATTTCGGGTGAAATTCCTCGCGAAATCGGTAACTGTTCGGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTTTCTGGTGAGATTCCTTTCGAAATAGGGAAACTTGTGAAGCTTGAAAAGATTCTGTTATGGCAGAATAGTTTTGTTGGTGGAATACCTGATGAGATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTTTCTCTCCGGGGGAATGCCGAAGAGTTTAGGGAAGTTGTCGAATCTTGAAGAGCTTATGTTGAGTAATAATAACATTTCTGGTTCGATACCGGGTTCGATTTCGAATCTGACAAATTTGATTCAGTTGCAGTTGGATACAAATGAGATATCGGGCTTGATTCCGGCTGAGATTGGTAAATTGACGAAGCTAACGGTGTTTTTCGCTTGGCAGAATAGGCTTGAAGGGAGAATTCCGTCGGAGTTAGGAGATTGTTTGAGCCTCGAGGCTTTGGATTTGTCTTATAATGATCTCAGTGATAGTTTACCTTCAAATCTTTTTACGCTACGGAATTTAACCAAGCTTTTGTTGATTTCTAATGATATCTCTGGCTCTATTCCTCCTGAGATTGGTAATTGTAGTTCTCTCATTCGACTCCGGCTCGTAGATAACAGAATCAACGGTGAGATACCGAGAGAAATAGGTTTCCTCAATAACCTTAGTTTTCTTGATTTGTCTGGAAATCGTCTTAGTGGTTCGGTGCCGTTAGAGATTGGAAAATGCAGAGAACTTCAAATGTTGAACCTAAGTAATAACTCGCTTTCTGGTGATTTGCATAGTTATTTGTCTACTCTTATGATGCTAGAGGTTTTGGACGTTTCGATGAATAATTTTTCTGGCGAGGTTCCGATGAGTATTGGTCAATTAACTTCACTTCTTAGAGTTACTTTAAGCAAAAACTCTTTCTCTGGATCAATTCCTTCGACTCTTGGGAAATGTTCAGGTATTCAACTTCTCGACCTTAGCAAAAACATGTTCTCGGGTAGCATACCGCGCGAGTTGTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCACAACGCATTATCTGGAGTGATCCCGGTTGAGATATCGGCTCTTAACAAGTTGTCTGTTTTAGACATTTCGCATAACAATCTTGAAGGTGACTTGATGGTGTTTTCAGGCCTTGAAAATCTTGTTTCTTTGAACATTTCGTATAACCAATTCACTGGTTATTTACCAGACAGCAAGTTGTTTCACCAACTAGCAGCAACGGATTTGGATGGAAATCATGGTTTGTGTCCTAATGGACATGATTCATGCTTCATTGGAAGTTCTGCAATGACAAAGATGTTAAATGGCTCTAATTCTAAGAGGTCGGAGATGATTAAAGTTGCGATTGGATTGCTCAGTTCTTTGGCCGTTGCAATGGCAATATTCGGAGTTCTTACCGTCTTTCGAGCAAGGAAAATGGTTCGAGACGACAATGATTCCGAGATGGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTTAACTTTCGTGTGGACCAAATTCTAAAATGTTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCAGGGATCGTTTATCGTGCGGAAATGGAAAACGGCGATGTCATTGCTGTCAAACGGCTATGGCCAACAACAACGGCAGCCACTTCTTCTGCCAGATATGTTCACAGTCAAAGTGACAAGTTAGCTGTTAACGGAGGAATTCGCGATTCATTTTCTGCCGAGGTTAAAACTCTTGGTTCGATACGCCACAAGAACATCGTAAGGTTCTTAGGTTGCTGTTGGAATAGAAACACAAGATTGCTTATGTATGACTACATGCCAAATGGGAGTCTTGGAGGCTTACTTCATGAAAGAAGTGGTAATTGCTTGGAGTGGCACATTAGATTCAAGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACATCATGATTGTGCTCCTCCTATTGTTCACAGAGACATTAAGGCCAACAACATCCTCATAGGACTTGAATTTGAACCTTACATAGCCGATTTTGGACTTGCAAAACTCGTTGATGATGGAGATTTCGCACGATCTTCTAGCACTCTTGCCGGTTCTTATGGTTACATAGCTCCCGAGTACGGATACATGATGAAGATAACCGAGAAAAGTGATGTATACAGCTACGGCATAGTTGTATTAGAAGTACTAACAGGTAAACAACCGATCGATCCAACAATACCAGACGGACTTCACATTGTCGATTGGGTTAGACAGAAAAGAGGGCGAGTTGAAGTGCTCGACGAAACCTTAACAACTAGGCCAGAATCCGAAATAGAAGAGATGTTGCAGACTCTAGGTGTTGCTTTGTTATGCGTAACCCCGAGTCCAGACGACAGACCAACGATGAAAGATGTGGTGGCCATGATGAAAGAAATTAAACAAGAGAGAGATGAATGTGTGAAAGTTTTTGATCAACATGAGAGTAATCATTCTAATGAGGCAGTGGAAGGGATGAAACATTCATGTCCTGCAACAAGTAGCAGCAACATGAATGTGCATTTACATTACTCTCCTCATATTTCTACAACACTAGATTAA 3360 0.3994 MNSLSYFFHLLLLFTLLLPLSSSTNELTTLLSWTQPSRNHPTPPFSNINPLDTNPCKWSFITCSSQNLVTEITIQNVQLALPFPPNISSFSSLQKLVISGTNLTGTIPAEIGNCLNLITIDLSSNSLVGEIPSTIGNLKKLENLILNSNQLSGSIPIRVGDCVSLKTLDIFDNNLTRNLPHELGNLLNLEVIRAGGNKDIVGKIPEELGECRNLTVLGLADTRISGSIPSSLGKLTLLQTISIYSTLISGEIPREIGNCSELVNLFLYENDLSGEIPFEIGKLVKLEKILLWQNSFVGGIPDEIGNCSSLKILDLSLNFLSGGMPKSLGKLSNLEELMLSNNNISGSIPGSISNLTNLIQLQLDTNEISGLIPAEIGKLTKLTVFFAWQNRLEGRIPSELGDCLSLEALDLSYNDLSDSLPSNLFTLRNLTKLLLISNDISGSIPPEIGNCSSLIRLRLVDNRINGEIPREIGFLNNLSFLDLSGNRLSGSVPLEIGKCRELQMLNLSNNSLSGDLHSYLSTLMMLEVLDVSMNNFSGEVPMSIGQLTSLLRVTLSKNSFSGSIPSTLGKCSGIQLLDLSKNMFSGSIPRELFQIEALDIALNLSHNALSGVIPVEISALNKLSVLDISHNNLEGDLMVFSGLENLVSLNISYNQFTGYLPDSKLFHQLAATDLDGNHGLCPNGHDSCFIGSSAMTKMLNGSNSKRSEMIKVAIGLLSSLAVAMAIFGVLTVFRARKMVRDDNDSEMGGGGDSWPWQFTPFQKVNFRVDQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTAATSSARYVHSQSDKLAVNGGIRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGGLLHERSGNCLEWHIRFKIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGRVEVLDETLTTRPESEIEEMLQTLGVALLCVTPSPDDRPTMKDVVAMMKEIKQERDECVKVFDQHESNHSNEAVEGMKHSCPATSSSNMNVHLHYSPHISTTLD 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01854 1119 Gene3D Ribonuclease Inhibitor 302 389 IPR032675 -
Vivi6g01854 1119 Gene3D Phosphorylase Kinase; domain 1 760 870 - -
Vivi6g01854 1119 SUPERFAMILY L domain-like 26 297 - -
Vivi6g01854 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 405 692 - -
Vivi6g01854 1119 FunFam Predicted protein 180 278 - -
Vivi6g01854 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 871 1081 - -
Vivi6g01854 1119 Pfam Leucine rich repeat 285 344 IPR001611 GO:0005515
Vivi6g01854 1119 SMART LRR_sd22_2 331 357 - -
Vivi6g01854 1119 SMART LRR_sd22_2 475 496 - -
Vivi6g01854 1119 SMART LRR_sd22_2 620 645 - -
Vivi6g01854 1119 SMART LRR_sd22_2 138 159 - -
Vivi6g01854 1119 FunFam Nuclear pore complex protein NUP107 23 179 - -
Vivi6g01854 1119 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Vivi6g01854 1119 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 457 1064 - -
Vivi6g01854 1119 Gene3D Ribonuclease Inhibitor 390 690 IPR032675 -
Vivi6g01854 1119 ProSiteProfiles Leucine-rich repeat profile. 333 355 IPR001611 GO:0005515
Vivi6g01854 1119 SUPERFAMILY RNI-like 602 720 - -
Vivi6g01854 1119 Gene3D Ribonuclease Inhibitor 181 301 IPR032675 -
Vivi6g01854 1119 Gene3D Transferase(Phosphotransferase) domain 1 871 1090 - -
Vivi6g01854 1119 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 758 870 - -
Vivi6g01854 1119 SUPERFAMILY Protein kinase-like (PK-like) 760 1063 IPR011009 -
Vivi6g01854 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 915 927 IPR008271 GO:0004672|GO:0006468
Vivi6g01854 1119 PRINTS Leucine-rich repeat signature 478 491 - -
Vivi6g01854 1119 PRINTS Leucine-rich repeat signature 620 633 - -
Vivi6g01854 1119 Pfam Protein tyrosine and serine/threonine kinase 778 1061 IPR001245 GO:0004672|GO:0006468
Vivi6g01854 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 279 387 - -
Vivi6g01854 1119 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Vivi6g01854 1119 ProSiteProfiles Protein kinase domain profile. 775 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01854 1119 SMART serkin_6 775 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01854 1119 SUPERFAMILY RNI-like 244 594 - -
Vivi6g01854 1119 SMART LRR_typ_2 643 668 IPR003591 -
Vivi6g01854 1119 SMART LRR_typ_2 138 162 IPR003591 -
Vivi6g01854 1119 SMART LRR_typ_2 475 499 IPR003591 -
Vivi6g01854 1119 SMART LRR_typ_2 427 451 IPR003591 -
Vivi6g01854 1119 SMART LRR_typ_2 547 571 IPR003591 -
Vivi6g01854 1119 SMART LRR_typ_2 331 354 IPR003591 -
Vivi6g01854 1119 SMART LRR_typ_2 355 379 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01854 Vivi-Chr6 82501691 82505482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01854 18 1068 Receptor kinase-like Gene Family AT5G56040 47.048 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g01854 PK_Tyr_Ser-Thr 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01854 - - gmx:100794698 1682.15