Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01853 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCTGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGATGATGATCTTTTAGGTATGAATATGAATGATGATGCATCTGTGTTCTATGCTGATTTTCCTTCTTTACCTGATTTTCCATGCATGTCATCAGCATCATGTTCATCATCTTCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGGTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAACAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCGTCTCTAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGACGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCTTCTTCGATTTTTCAAACCGATGAAGAAAACCCTTTAGTTGATGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTTTTGCATGATGATGGTGAAACAAAACCAGACCTCAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTTAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCCTGTTCCTCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAACCAAAACACGACAAATTCGTGTTTTAACCAAACTTCCTGGATAGATCAAACACAAACACAAACACAAATGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAGCCGATGGTTGGAGTTGGATATGTTGGTGATATTCATTACACAAATGGTTCCGTTTCGAATAACCTTAACCATAATATTAACCTCTATCAACATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAACCGTCGTTTGTAGATAGCAACAACAATGTTTTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAACCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGTTTCGGATAAGAAACAGGGTTGGAAGCCAGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACCATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATATTGGCCAAATAACAAAAGCAGAATGTATCTACTTGAAAACACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACATACCATCCTCACCAAAGAGGAGGAAATGA 2265 0.4 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDDDDLLGMNMNDDASVFYADFPSLPDFPCMSSASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEGEEDHHGEKMKSCDDNNNNQGFLNMHDPLDHHGQHAITLASTPSLEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPSSIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVLHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNPVPQQPQPQFQDLCPNQNTTNSCFNQTSWIDQTQTQTQMPLVVPPQQFSQPMVGVGYVGDIHYTNGSVSNNLNHNINLYQHGSGNEYHQFNVVPSYNQPSFVDSNNNVLQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNVSDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDIPSSPKRRK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01853 754 MobiDBLite consensus disorder prediction 337 357 - -
Vivi6g01853 754 CDD BfiI_C_EcoRII_N_B3 603 706 - -
Vivi6g01853 754 MobiDBLite consensus disorder prediction 558 593 - -
Vivi6g01853 754 SUPERFAMILY DNA-binding pseudobarrel domain 604 702 IPR015300 -
Vivi6g01853 754 MobiDBLite consensus disorder prediction 506 538 - -
Vivi6g01853 754 ProSiteProfiles B3 DNA-binding domain profile. 605 709 IPR003340 GO:0003677
Vivi6g01853 754 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 281 722 IPR044800 GO:0003700
Vivi6g01853 754 Pfam B3 DNA binding domain 606 704 IPR003340 GO:0003677
Vivi6g01853 754 MobiDBLite consensus disorder prediction 726 745 - -
Vivi6g01853 754 MobiDBLite consensus disorder prediction 101 124 - -
Vivi6g01853 754 MobiDBLite consensus disorder prediction 709 754 - -
Vivi6g01853 754 MobiDBLite consensus disorder prediction 570 588 - -
Vivi6g01853 754 SMART B3_2 605 707 IPR003340 GO:0003677
Vivi6g01853 754 MobiDBLite consensus disorder prediction 711 725 - -
Vivi6g01853 754 FunFam B3 domain-containing transcription factor FUS3 601 718 - -
Vivi6g01853 754 Gene3D - 596 717 IPR015300 -
Vivi6g01853 754 MobiDBLite consensus disorder prediction 101 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01853 Vivi-Chr6 82479651 82483404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01853 20 741 B3 DNA Binding Superfamily AT3G24650 44.603 3.81e-159 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01853 B3 4.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01853 K09287 - gmx:100810343 739.954