Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01852 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCTGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGATGATGATCTTTTAGCATCATGTTCATCATCTTCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGGTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAACAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCGTCTCTAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGACGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCTTCTTCGATTTTTCAAACCGATGAAGAAAACCCTTTAGTTGATGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTTTTGCATGATGATGGTGAAACAAAACCAGACCTCAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTTAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCCTGTTCCTCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAACCAAAACACGACAAATTCGTGTTTTAACCAAACTTCCTGGATAGATCAAACACAAACACAAACACAAATGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAGCCGATGGTTGGAGTTGGATATGTTGGTGATATTCATTACACAAATGGTTCCGTTTCGAATAACCTTAACCATAATATTAACCTCTATCAACATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAACCGTCGTTTGTAGATAGCAACAACAATGTTTTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAACCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGTTTCGGATAAGAAACAGGGTTGGAAGCCAGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACCATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATATTGGCCAAATAACAAAAGCAGAATGTATCTACTTGAAAACACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACATACCATCCTCACCAAAGAGGAGGAAATGA 2181 0.4012 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDDDDLLASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEGEEDHHGEKMKSCDDNNNNQGFLNMHDPLDHHGQHAITLASTPSLEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPSSIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVLHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNPVPQQPQPQFQDLCPNQNTTNSCFNQTSWIDQTQTQTQMPLVVPPQQFSQPMVGVGYVGDIHYTNGSVSNNLNHNINLYQHGSGNEYHQFNVVPSYNQPSFVDSNNNVLQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNVSDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDIPSSPKRRK 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01852 726 SUPERFAMILY DNA-binding pseudobarrel domain 578 674 IPR015300 -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 49 63 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 698 717 - -
Vivi6g01852 726 CDD BfiI_C_EcoRII_N_B3 577 678 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 75 114 - -
Vivi6g01852 726 Gene3D - 570 689 IPR015300 -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 681 726 - -
Vivi6g01852 726 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 255 694 IPR044800 GO:0003700
Vivi6g01852 726 MobiDBLite consensus disorder prediction 1 24 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 683 697 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 532 567 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 311 331 - -
Vivi6g01852 726 Pfam B3 DNA binding domain 580 676 IPR003340 GO:0003677
Vivi6g01852 726 MobiDBLite consensus disorder prediction 480 512 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 75 98 - -
Vivi6g01852 726 FunFam B3 domain-containing transcription factor FUS3 575 690 - -
Vivi6g01852 726 MobiDBLite consensus disorder prediction 41 63 - -
Vivi6g01852 726 SMART B3_2 579 679 IPR003340 GO:0003677
Vivi6g01852 726 ProSiteProfiles B3 DNA-binding domain profile. 579 681 IPR003340 GO:0003677
Vivi6g01852 726 MobiDBLite consensus disorder prediction 544 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01852 Vivi-Chr6 82479137 82483404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01852 20 713 B3 DNA Binding Superfamily AT3G24650 43.293 2.09e-150 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01852 B3 3.1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01852 K09287 - gmx:100810343 692.189