Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01851 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCTGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGATGATGATCTTTTAGGTATGAATATGAATGATGATGCATCTGTGTTCTATGCTGATTTTCCTTCTTTACCTGATTTTCCATGCATGTCATCAGCATCATGTTCATCATCTTCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGGTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAACAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCGTCTCTAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGACGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCTTCTTCGATTTTTCAAACCGATGAAGAAAACCCTTTAGTTGATGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTTTTGCATGATGATGGTGAAACAAAACCAGACCTCAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTTAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCCTGTTCCTCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAACCAAAACACGACAAATTCGTGTTTTAACCAAACTTCCTGGATAGATCAAACACAAACACAAACACAAATGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAGCCGATGGTTGGAGTTGGATATGTTGGTGATATTCATTACACAAATGGTTCCGTTTCGAATAACCTTAACCATAATATTAACCTCTATCAACATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAACCGTCGTTTGTAGATAGCAACAACAATGTTTTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAACCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGTTTCGGATAAGAAACAGGGTTGGAAGCCAGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACCATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATATTGGCCAAATAACAAAAGCAGAATGTATCTACTTGAAAACACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACATACCATCCTCACCAAAGAGGAGGAAATGA 2259 0.3997 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDDDDLLGMNMNDDASVFYADFPSLPDFPCMSSASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEGEEDHHGEKMKSCDDNNNNQGFLNMHDPLDHHGQHAITLASTPSLEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPSSIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVLHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNPVPQQPQPQFQDLCPNQNTTNSCFNQTSWIDQTQTQTQMPLVVPPQQFSQPMVGVGYVGDIHYTNGSVSNNLNHNINLYQHGSGNEYHQFNVVPSYNQPSFVDSNNNVLQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNVSDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDIPSSPKRRK 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01851 752 MobiDBLite consensus disorder prediction 709 723 - -
Vivi6g01851 752 MobiDBLite consensus disorder prediction 337 357 - -
Vivi6g01851 752 Pfam B3 DNA binding domain 606 702 IPR003340 GO:0003677
Vivi6g01851 752 MobiDBLite consensus disorder prediction 558 593 - -
Vivi6g01851 752 MobiDBLite consensus disorder prediction 506 538 - -
Vivi6g01851 752 Gene3D - 596 715 IPR015300 -
Vivi6g01851 752 MobiDBLite consensus disorder prediction 101 124 - -
Vivi6g01851 752 MobiDBLite consensus disorder prediction 570 588 - -
Vivi6g01851 752 SUPERFAMILY DNA-binding pseudobarrel domain 604 700 IPR015300 -
Vivi6g01851 752 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 281 720 IPR044800 GO:0003700
Vivi6g01851 752 CDD BfiI_C_EcoRII_N_B3 603 704 - -
Vivi6g01851 752 ProSiteProfiles B3 DNA-binding domain profile. 605 707 IPR003340 GO:0003677
Vivi6g01851 752 SMART B3_2 605 705 IPR003340 GO:0003677
Vivi6g01851 752 MobiDBLite consensus disorder prediction 724 743 - -
Vivi6g01851 752 FunFam B3 domain-containing transcription factor FUS3 601 716 - -
Vivi6g01851 752 MobiDBLite consensus disorder prediction 101 140 - -
Vivi6g01851 752 MobiDBLite consensus disorder prediction 707 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01851 Vivi-Chr6 82479137 82483404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01851 20 739 B3 DNA Binding Superfamily AT3G24650 44.720 5.90e-161 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01851 B3 3.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01851 K09287 - gmx:100810343 731.865