Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01850 ATGGAGAGTGGCTTAGATCTGCATGCAAAGATGGTGAATGAGAAAGAAGAAGACGGTTTTGGAGGTTTAGGAGAAGATGAAAAATTAGTAGCTGTTTCTGAGAGAGAGATTTGGCTTGATGATACTACAAATCATCAAGATGATGATGATCTTTTAGCATCATGTTCATCATCTTCATCATCTTCATGTTCAACACCATTGAAAACCATTGCATGTACTACTACTTCAACTACTACTACAACTGCAACATCTTCTTCCTCTTCTGCTTCTTCTTCCTCTGCAGCTTCTTGGGCTGTTTTGAAATCAGAAGGTGAAGAAGATCATCATGGTGAGAAAATGAAGAGTTGTGATGATAATAACAATAATCAAGGTTTTTTGAACATGCATGATCCATTAGATCATCATGGTCAACATGCAATAACTTTGGCATCAACTCCGTCTCTAGAGATTCCTCAACAACAGCAAGAAGAACAAGATCTTGGTGTTGGTGGTGAATGCATGGAGGACGTTATGATGGATACTTTTGGCTACATGGAGCTTTTAGAAACCAATGAATTTTTCGACCCTTCTTCGATTTTTCAAACCGATGAAGAAAACCCTTTAGTTGATGATTTCACACAAGAACAAGTTCTAGTGCAACAACAACATCATCCACAAGTTCCAATAGTTTTGCATGATGATGGTGAAACAAAACCAGACCTCAATTTTGATGGTGGTGCATGTGATAGTCTTAATGATGAGATGAGTAGTGTTTTCTTGGAATGGCTTAAATCGAACAAAGATAGCGTATCGGCTAATGATTTGAGGAATGTGAAGCTTAGGAAATCAACAATTGAGAGTGCTGCTAGAAGATTAGGTGGTGGAAAAGAAGGGATGAAACAGTTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAGCAAAAGACTCAAAGAAAACAACAATAACACAACAACCTCAAATCCTGTTCCTCAACAGCCACAACCGCAGTTTCAAGATCTATGTCCGAACCAAAACACGACAAATTCGTGTTTTAACCAAACTTCCTGGATAGATCAAACACAAACACAAACACAAATGCCTCTTGTTGTTCCTCCACAACAATTTTCGCAGCCGATGGTTGGAGTTGGATATGTTGGTGATATTCATTACACAAATGGTTCCGTTTCGAATAACCTTAACCATAATATTAACCTCTATCAACATGGTTCTGGTAATGAGTATCATCAATTCAATGTTGTACCGAGCTACAATCAACCGTCGTTTGTAGATAGCAACAACAATGTTTTACAACCTCATGGTTTGAGTTTTGGAGGATATGGAAACCAATATGGTTCTTATCAGTTTTTTCATGGAGGTGGTGGTGATAGGTTAATGAGGTTAGGTCCGTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCGAGGCAGAGAAGGTTTGTTCCTCATCATAGGAATCATCAGAATCAAGGTTCTGATTCGGTTGGTAGATTGCGTGGTGGTGGTGGTGGCGATAATTGCACCAATGATGCGGGTGTAAATCAAGGTAGTTGGATGTATTGGCAGAGTATGGCTGGTGGGAAAGCTACCGCAGTTCCGGCTGAGCCTGCGCAGCAGCCGGTGGAACGCGACCGCACCAACAATCAGACACAGAATTCTCATCTGGGTCGAAATGTTTCGGATAAGAAACAGGGTTGGAAGCCAGAGAAGAACTTGAAGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCCGAACTCGAGGCAAGAGATGGCATTACCATTACCATGGAAGATATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATATTGGCCAAATAACAAAAGCAGAATGTATCTACTTGAAAACACTGGTGACTTTGTGAAAGCTAATGGACTCCAAGAGGGTGATTTCATAGTGTTATATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGAGCAAAACCGGAGGCGAAGAAAACAGGAAAAGCACAGAAAAACCAGCAGCATGAGAATAATAGTAATACAGCTGGAAATGAAGCGGTGGATAATAATGACATACCATCCTCACCAAAGAGGAGGAAATGA 2187 0.4015 MESGLDLHAKMVNEKEEDGFGGLGEDEKLVAVSEREIWLDDTTNHQDDDDLLASCSSSSSSSCSTPLKTIACTTTSTTTTTATSSSSSASSSSAASWAVLKSEGEEDHHGEKMKSCDDNNNNQGFLNMHDPLDHHGQHAITLASTPSLEIPQQQQEEQDLGVGGECMEDVMMDTFGYMELLETNEFFDPSSIFQTDEENPLVDDFTQEQVLVQQQHHPQVPIVLHDDGETKPDLNFDGGACDSLNDEMSSVFLEWLKSNKDSVSANDLRNVKLRKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQSKRLKENNNNTTTSNPVPQQPQPQFQDLCPNQNTTNSCFNQTSWIDQTQTQTQMPLVVPPQQFSQPMVGVGYVGDIHYTNGSVSNNLNHNINLYQHGSGNEYHQFNVVPSYNQPSFVDSNNNVLQPHGLSFGGYGNQYGSYQFFHGGGGDRLMRLGPSATKEARKKRMARQRRFVPHHRNHQNQGSDSVGRLRGGGGGDNCTNDAGVNQGSWMYWQSMAGGKATAVPAEPAQQPVERDRTNNQTQNSHLGRNVSDKKQGWKPEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQHENNSNTAGNEAVDNNDIPSSPKRRK 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01850 728 MobiDBLite consensus disorder prediction 685 699 - -
Vivi6g01850 728 Pfam B3 DNA binding domain 580 678 IPR003340 GO:0003677
Vivi6g01850 728 MobiDBLite consensus disorder prediction 49 63 - -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 75 114 - -
Vivi6g01850 728 Gene3D - 570 691 IPR015300 -
Vivi6g01850 728 ProSiteProfiles B3 DNA-binding domain profile. 579 683 IPR003340 GO:0003677
Vivi6g01850 728 MobiDBLite consensus disorder prediction 1 24 - -
Vivi6g01850 728 CDD BfiI_C_EcoRII_N_B3 577 680 - -
Vivi6g01850 728 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 255 696 IPR044800 GO:0003700
Vivi6g01850 728 MobiDBLite consensus disorder prediction 532 567 - -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 311 331 - -
Vivi6g01850 728 FunFam B3 domain-containing transcription factor FUS3 575 692 - -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 480 512 - -
Vivi6g01850 728 SUPERFAMILY DNA-binding pseudobarrel domain 578 676 IPR015300 -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 700 719 - -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 75 98 - -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 41 63 - -
Vivi6g01850 728 SMART B3_2 579 681 IPR003340 GO:0003677
Vivi6g01850 728 MobiDBLite consensus disorder prediction 683 728 - -
Vivi6g01850 728 MobiDBLite consensus disorder prediction 544 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01850 Vivi-Chr6 82479136 82483404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01850 20 715 B3 DNA Binding Superfamily AT3G24650 43.179 1.14e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01850 B3 4.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01850 K09287 - gmx:100810343 700.279