Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01839 ATGGCATTTCTCAAAACCCTTCTCTCCCTCTACATTCCCCTCCTTTTCCTCTCCTGTTTCCTCACCAAAGCCTCAACAAAATCCACACTTCCTCCAACCACTTCCTCTGATGTTCAACTCATCCTATTCAAAATCAAACCCTCCCTCCAAGGCACCACAGAGAACCTCCTCCTCTCCTCATGGAACACCTCAACTCCTCTCTGTCAATGGCGAGGCCTCAAATGGGTCTTCACCAACGGTTCATCTCTCTCATGTACTGACCTCTCTTCACCACAATGGAACAATCTTTCCTTCTCAAAAGACCCTTTTCTCCACTTGCTGTCTCTTCAACTCCCCTCCGCAAATCTCTCCGGTTCTCTCCCCAGAGAGCTTGGTCAGTTTCCTATGCTGCAGAGTCTTTACCTTAACATCAACTCACTGAGTGGAACCATTCCTCTTGAGCTTGGTTACGCCTCTTCACTCTCTGATATTGATTTGAGTGATAACCTTTTGGTTGGTGACCTTCCACCTTCTGTGTGGAACTTGTGTGATAAGCTTGTTTCTCTTAAGGTTCATGGAAATTCATTATCTGGGTCTGTTTCAGAGCCTGCATTACCTGATTCATCTTGTAAGGTTTTGCAGTTTCTTGATTTGGGTGGGAATAGATTTTCGGGTGATTTTCCTGATTTTGTTACTAAATTTGGTGCTCTTAAACAGCTTGATTTAGGGAGTAATATGTTTTCTGGTGCAATTTCTAATGGTTTGGTTGGACTTAGGTTGGAAAAATTGAATCTTTCTCATAATAATTTTAGTGGGGTTGTTCCGGTTTTCGGCGAATCGAAATTCGGTGTGGATTGTTTTGAAGGGAATAGTCCTGATTTGTGTGGTCCGCCTTTGGGGAGTTGTGGGAAGAATTCTTCATTGAGTTCTGGTGCTGTTGCTGGGATTGTTATTAGTCTTATGACAGGTGCTGTTGTTTTGGCTTCTTTGTTGATTGGTTATATGCAAAACAAGAAGAAAAAGGGGAGTGGTGAGAGTGAAGATGAGTTGAATGACGATGAAGAGGATGAAGAGAATGGTGGCGGTGGTGGTTCGGTTGGTGGAAATGGGGGTGAAGGGAAGCTTATGTTGTTTGCTGGTGGTGAGAATTTGACACTTGATGATGTGTTGAATGCGACGGGACAAGTTATGGAGAAGACGTGTTATGGGACTGCTTATAAGGCTAAGCTTGCGGATGGTGGGACGATCGCGTTGAGGTTGTTGAGGGAAGGGACTTGCAAGGATAGGAGTTCGTGTTTGGCGGTTATTAAACAGTTGGGGAAAATTCGACACGAGAATTTGATTCCTTTGAGAGCTTTCTATCAAGGGAAGAGAGGGGAGAAGCTGCTTATTTATGACTATTTGCCTCTCAGAACACTTCATGAACTTTTGCATGAAATTAAAGCAGGAAAACCAGTGCTAAACTGGGCAAGGCGACACAAGATTGCATTAGGTATAGCAAGAGGACTAGCATATCTTCATACAGGACTCGACGTTCCTATAACTCACGCAAACGTGAGATCCAAGAACGTGCTCGTAGACGACTTCTTCGTTGCCAGGATCACTGACTTCGCGCTCGACAAACTAATGATCCCTTCCATAGCAGACGAAATGGTGGCACTCGCGAAAACAGACGGCTACAAGGCACCAGAGCTTCAAAGAATGAAGAAATGCAACTCAAGGACCGACGTCTACGCCTTCGGTATACTACTTCTCGAGATCTTAATCGGTAGAAAGCCTGGTAAGAACGGAAGAAGCGGCGAGTATATAGATTTACCTTCAATGGTGAAAGTAGCTGTCTTGGAGGAAACTACAATGGAAGTTTTCGACGTGGAGCTCTTGAAAGGGATAAGAAGTCCAATGGAAGACGGGCTGGTTCAGGCGTTGAAGCTGGCGATGGGATGCTGTGCACCGGTGGCGTCGGTTAGACCGAGTATGGAGGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGTCCAACTGAGACAAGAAGTGGAAGTATTACACCATTTTGA 2055 0.4501 MAFLKTLLSLYIPLLFLSCFLTKASTKSTLPPTTSSDVQLILFKIKPSLQGTTENLLLSSWNTSTPLCQWRGLKWVFTNGSSLSCTDLSSPQWNNLSFSKDPFLHLLSLQLPSANLSGSLPRELGQFPMLQSLYLNINSLSGTIPLELGYASSLSDIDLSDNLLVGDLPPSVWNLCDKLVSLKVHGNSLSGSVSEPALPDSSCKVLQFLDLGGNRFSGDFPDFVTKFGALKQLDLGSNMFSGAISNGLVGLRLEKLNLSHNNFSGVVPVFGESKFGVDCFEGNSPDLCGPPLGSCGKNSSLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKKKGSGESEDELNDDEEDEENGGGGGSVGGNGGEGKLMLFAGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGTCKDRSSCLAVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHELLHEIKAGKPVLNWARRHKIALGIARGLAYLHTGLDVPITHANVRSKNVLVDDFFVARITDFALDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGRKPGKNGRSGEYIDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01839 684 MobiDBLite consensus disorder prediction 665 684 - -
Vivi6g01839 684 MobiDBLite consensus disorder prediction 333 363 - -
Vivi6g01839 684 Gene3D Ribonuclease Inhibitor 204 296 IPR032675 -
Vivi6g01839 684 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Vivi6g01839 684 Gene3D Ribonuclease Inhibitor 37 198 IPR032675 -
Vivi6g01839 684 Gene3D Transferase(Phosphotransferase) domain 1 463 676 - -
Vivi6g01839 684 Pfam Protein tyrosine and serine/threonine kinase 388 659 IPR001245 GO:0004672|GO:0006468
Vivi6g01839 684 Gene3D Phosphorylase Kinase; domain 1 371 460 - -
Vivi6g01839 684 ProSiteProfiles Protein kinase domain profile. 384 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01839 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 663 IPR046959 -
Vivi6g01839 684 FunFam Leucine-rich repeat receptor-like protein kinase 203 295 - -
Vivi6g01839 684 SUPERFAMILY Protein kinase-like (PK-like) 393 660 IPR011009 -
Vivi6g01839 684 SUPERFAMILY L domain-like 68 269 - -
Vivi6g01839 684 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 102 193 - -
Vivi6g01839 684 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vivi6g01839 684 MobiDBLite consensus disorder prediction 659 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01839 Vivi-Chr6 82043497 82046142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01839 1 684 Receptor kinase-like Gene Family AT3G24660 70.511 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi6g01839 PK_Tyr_Ser-Thr 9.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01839 - - gmx:100814814 1093.95