Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01836 ATGGAGTTACGGTTTGCATCACAGTTCGTCTTCAGCATTCTTGTTATCGCGCTACTTTTCTCTCTCAATCTCACCAATGCAATCGATCACAATGAATCGAGTGTTGTTGAAGGAGAAGAGAAGTTACAGATGCAGAGCTTGAAGAATTCATCAATGGCGGAAAGTTTAAGTGATGCTTTGAACGAGCATGCTGTTGATAATCCAGAGGAACTTGCTTCCATGGTAGATACGACTATACGCAATCACACGGAGAGAAGGAGTCTGAGTTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAGACGTTGGTCCTTCCGGCGAAAGAGGTTGGCTGATTGCGCCATTGGTTTCGGTCGCAATGCCATCGGTGGCCGTGATGGAAAGTACTATGTTGTGTCGGACCCAAAAGACGATGACCCCGTGAACCCAAGACCGGGCACTCTCCGTCACGCTGTCATTCAAGATAGGCCATTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCTGAAGCAAGAACTGATCATGAACAGCTTTAAGACCATTGATGGTCGTGGTGCCAACGTTCATATTGCATTTGGAGCCTGCATTACAATCCAGTTTATCACCAATGTCATCATCCATGGTGTTCATATTCATGATTGTAAGCCTACTGGGAATGCTATGGTTCGTAGCTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGACCACAACTCTCTTTCCAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGTTCCACTGCCATTACTATTTCCAATAACTATTTCACCCACCACAATGAGGTTATACTATTGGGTCACAGTGACTCGTATGTCCGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGCCTTATCCAAAGGATGCCTAGGTGCAGACATGGGTATTTCCATGTGGTAAACAATGACTATACCCATTGGGAGATGTATGCCATTGGAGGTAGTGCTGAACCCACAATTAACAGCCAAGGAAACAGATACCTTGCTCCTCAGAACCCTTTTGCTAAGGAGGTAACAAAGAGGGTGGATACAGGGTCCGGCATATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCCTTTTTCATTCCATCAGGAGCAGAAGCTGGAGCAAGCTATGCTAGAGCCTCAAGTTTAGGGGCCAAATCATCTTCTCTAGTAGGCTCCTTAACCTCAAGTGCTGGAGTTATTAGCTGTCGCAGGGGTGGCGTGTGTTAA 1338 0.4611 MELRFASQFVFSILVIALLFSLNLTNAIDHNESSVVEGEEKLQMQSLKNSSMAESLSDALNEHAVDNPEELASMVDTTIRNHTERRSLSFFSCGTGNPMDDCWRCDRRWSFRRKRLADCAIGFGRNAIGGRDGKYYVVSDPKDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGSGIWKGWNWRSEGDLLLNGAFFIPSGAEAGASYARASSLGAKSSSLVGSLTSSAGVISCRRGGVC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01836 445 FunFam Pectate lyase 96 438 - -
Vivi6g01836 445 PANTHER PECTATE LYASE 18-RELATED 66 442 IPR045032 GO:0030570
Vivi6g01836 445 SUPERFAMILY Pectin lyase-like 74 439 IPR011050 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Vivi6g01836 445 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Vivi6g01836 445 Pfam Pectate lyase 179 360 IPR002022 -
Vivi6g01836 445 Gene3D - 96 438 IPR012334 -
Vivi6g01836 445 SMART amb_all 171 368 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01836 Vivi-Chr6 81688882 81694236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01836 31 445 Polysaccharide Lyase AT4G13710 75.414 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01836 K01728 - gmx:100809277 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01836 6 81688882 81694236 Vivi6g01836 6 81688882 81694236 ECH