Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01834 ATGGTGCTGATAGAGCAGGAGAAGACTGACGATCCAAACGTGAATCCACCAAACGCTACTGCCGGCAACGACGCCTCCGACGGCTTCGAAACCGCCAGTGAGGCCGATCTCGATAGCGACGGTGACGATGACAGAGCAAGCAGCCGAGAAGAATTGCAGCACAGTGATCAACTGCAGAAGCCGCCGACGCGGACAGAGGGAGAACAGGAACAAGATGTTCCTCAGCAAAGCATTTCCTCCGAGGAGGCTTTAATCAATGAAGATGAATTGAGACAGAAAGCATTGGATGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAACTCTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGATCATGCCTTACAAGTTGCACTAGACATTCCTTCATTTGTGGAAATACGCTCAATATGCTATGCAAACCGTGCTGTGTGCTTTTTAAAACAGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAGCTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATCGATCCCTCAAATGATCAAGCTAGGAAAGCCATCCGTCGACTAGAGCCCCTTGCTGCAGTCAAACGGGAAAAAATGAAAGAAGAAATGATAGCAAAATTGAAAGAAATGGGCAATTCTGTCTTGGGACGTTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGTTCTTATTCTATCTCAATGGAACGCTAG 813 0.4354 MVLIEQEKTDDPNVNPPNATAGNDASDGFETASEADLDSDGDDDRASSREELQHSDQLQKPPTRTEGEQEQDVPQQSISSEEALINEDELRQKALDEANEAKVEGNKLFVDGKYEEALSQYDHALQVALDIPSFVEIRSICYANRAVCFLKQGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01834 270 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Vivi6g01834 270 SMART tpr_5 139 172 IPR019734 GO:0005515
Vivi6g01834 270 SMART tpr_5 98 131 IPR019734 GO:0005515
Vivi6g01834 270 SMART tpr_5 173 206 IPR019734 GO:0005515
Vivi6g01834 270 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Vivi6g01834 270 SUPERFAMILY TPR-like 94 215 IPR011990 GO:0005515
Vivi6g01834 270 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Vivi6g01834 270 MobiDBLite consensus disorder prediction 1 84 - -
Vivi6g01834 270 MobiDBLite consensus disorder prediction 11 27 - -
Vivi6g01834 270 Pfam Tetratricopeptide repeat 141 171 IPR001440 GO:0005515
Vivi6g01834 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 269 - -
Vivi6g01834 270 MobiDBLite consensus disorder prediction 68 83 - -
Vivi6g01834 270 MobiDBLite consensus disorder prediction 42 67 - -
Vivi6g01834 270 Gene3D Tetratricopeptide repeat domain 59 238 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01834 Vivi-Chr6 81514681 81518335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01834 66 240 Calmodulin-binding Proteins AT3G25230 34.375 4.94e-17 78.6