Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01821 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACAGATGGAAAGTTGTCTCCAACAACAAGGAACATTTTGAAATGATCTTTGTTGACAAATTTGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTGTTCACCGAAAAATGCTTATTAGGGCATACTTATGTTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAAATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCCGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATGCACAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAAGGTTGCTGCATCACTCCCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGGTCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAGGGTAACCCTGTCTGAACAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGTGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTACTATCGTGCCTGTCATATGTGTCAATCTATAGCGCGTGGGGACAGCCCCCCCTTTGAGTGTGAAGCTGGTCATGAAACCATGGCTGAAGTCCTTAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTATGGAACAGAGAATGTGAAATGCTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCTGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAACTTAAGGAAAAATGGGGAACAGATGAGGTCAGCTCTAATGAACTGACATTTGTTTTATAA 1356 0.4093 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNNKEHFEMIFVDKFGDDIHAVVPAPHVSVFTEKCLLGHTYVVSNFKVVPYVLAFRASGHKYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVKVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPVMKDFIDRMPEESRVTLSEQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWYYRACHMCQSIARGDSPPFECEAGHETMAEVLRYKIEIEVTHGGQSCNFVLWNRECEMLLGLSASQLRNTMIQAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQLKEKWGTDEVSSNELTFVL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01821 451 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi6g01821 451 Gene3D - 110 249 IPR012340 -
Vivi6g01821 451 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi6g01821 451 Gene3D - 254 434 IPR012340 -
Vivi6g01821 451 SUPERFAMILY Nucleic acid-binding proteins 294 411 IPR012340 -
Vivi6g01821 451 CDD RPA1_DBD_A_like 19 103 - -
Vivi6g01821 451 Gene3D - 3 104 IPR012340 -
Vivi6g01821 451 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi6g01821 451 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01821 Vivi-Chr6 81298231 81300261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01821 8 378 Core DNA Replication Machinery Family AT5G45400 20.393 3.30e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01821 - - vvo:131613993 902.123