Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01679 ATGGATTTCAGCTACTGTGCATATTTGTTCTCTGTTTTGTTGGTTTTGTATTTCTATTTGTTACATGTTAGTGTTGGTATAGACACCATCACATCGTCTCAATATATCAATATTAAGGGCAATGAAACTCTAATCTCCAAAGATGGTAACTTCACGTTGGGAGTTTTTAGCCCTAAAAACTCTACAAAACGATACGTTGGAATTTGGTGGAAGTCTCAATCTACAGTCATATGGGTGGCAAACAGAAACCAACCACTAAATGATTCTAATGGGATTATCACAATATCTGAAGATGGCAATCTTGTGGTATTAAATGGACAAGAACAAGTTATTTGGACATCAAATGTTTCCAACATAGCATCCAATACAAGATCTGAGTTTTCAGACTTTGGTAACCTCGTCCTTTTGGAAAGTACAACAGGGAATGTCTTATGGCAGAGTATTCATCAGCCTTCAGATACATTACTGCCTTACATGAAACTTTCAACCAACAAAAAAACAGGTAAGAGTATAAAACTCAAATCATGGAAAAGCCCTACTGATCCATCCGTTGGCAACTTCTCTTGTAGTACTGTTGAACGCCTACATATAATTGAAGCGTTCATCTTGAATGGAACTCGACCATATTGGCGCAGCGGTCCCTGGAATGGCAGGGTCTTAACTGGAATACAAACAATGTCAGTTGCATATTTTTTTGGTTTTCAAGGAGGAGATGATGGTGAAGGGAATATTAATGTATATTATACAATATCAAATGATGAGAGTTTTTTGATCTATCGTCTGAGTTCACAAGGAAAATTAGAAGAAACGGTGTGGGATGATGAAAAGAAAGAAATGCAAGTTACATGGACAAACCGGGAATCCGAGTGTGATGTATACGGTATATGTGGGGCATTTGCAAGCTGTAATTCATTGAGTTCCCCAATATGTAGCTGTTTGAGAGGGTTTGAGCCTAGAAACATACAAGAATGGAATAAACATAACTGGACTGGCGGGTGTGTTAGGAGGACACCTTTGCAGTGCGAAAGGGCCATCAATAAAACCACAAGTACAAAGGAAGACGTGTTTTTGAAATTGCAAAAGGTTAAAGTTCCGGATTTTGCAGAAGGCTTAGCTGTTCCACAAGAAATGTGCATAAGCTTATGCTTGAGTAATTGCTCTTGCACTGCGTACTCTTTCGCTGATGGGATTGGTTGTATGTCTTGGACCGGCAATCTACTTGACATACATCAACTCCAAGATGGAGGACTTGATCTATATGTTCGCGCAGCCTATGCAGAACTTGATCAAAGAAAAAACAAGACAATCATCATTATAAGTACAGTGATAATTGGAACTTTCATAATTGTCATTTGTGCATATATCATGTGGAGAAGGCCATCAAACCAACCAGCTAAACTGTGGCTCTTAACTAAATCAGCAAGGAAAAAGAACAACAAATCTTTCCAACTATTTAATAAAGGTGGATCACCAGAAGGTTATGCTAGTGACCATGTAATTGGAGAAATGTCCCAAGTTAAACTTCAAGAGCTTGTAATGTTTGATTTTGAAAAGCTTGCATCTGCCACAGACAACTTCCACTTGTCCAACAAGCTTGGACAAGGTGGTTTTGGTCCAGTATACAAGGGGAAACTGCAAGATGGTCGGGAAATTGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTAGTTTTGATTTGTAAGCTTCAACACCGGAATCTTGTAAGACTTGTTGGTTGCTGTATTGAAGGCGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCATCAAAAAATAATCTCCTGAATTGGAGCACACGGTATGGCATAATAGAAGGAATAGCTCGAGGATTGCTATATCTTCATAGAGATTCTAGACTAAGAATTATTCATAGAGATTTGAAGGCAAGTAATGTCTTGTTAGACGAGGAGCTGAATCCAAAAATATCTGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGTAGATCAGGCCAATACTAGCAGGATTGTCGGAACCTATGGCTATATGTTTCCTGAATATGCAATGCAAGGATTGTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGTTACTAGAGATTCTTACGGGGAGAAGGAACTCTAGTTTTTGTGACAACGAGCGTTCATTGAGCCTTATAGGATTTGTTTGGATGCAATGGATGGAAAACAATATTTTATCGCTAATAGATCGAGAAATATATGATCCTAGTCATCACAGTTACATTTTAAGGTACATACATATAGCACTTTTGTGCGTACAAGAACTTGCTGTAGATAGGCCTACTATGGCTGCAGTAATTTATATGCTTAACAGTGAAGCTGCATTACTTCCTCCAAGTAAACCTGCATTTATCCTGATGGAGAATATGTTGAACTCAAAGCGGCCTGAAGAATGTCAAAGTGTTAGTTCGATCAATAATGCCAGTATTACAGAAATCCGTGGCAGATAG 2532 0.3843 MDFSYCAYLFSVLLVLYFYLLHVSVGIDTITSSQYINIKGNETLISKDGNFTLGVFSPKNSTKRYVGIWWKSQSTVIWVANRNQPLNDSNGIITISEDGNLVVLNGQEQVIWTSNVSNIASNTRSEFSDFGNLVLLESTTGNVLWQSIHQPSDTLLPYMKLSTNKKTGKSIKLKSWKSPTDPSVGNFSCSTVERLHIIEAFILNGTRPYWRSGPWNGRVLTGIQTMSVAYFFGFQGGDDGEGNINVYYTISNDESFLIYRLSSQGKLEETVWDDEKKEMQVTWTNRESECDVYGICGAFASCNSLSSPICSCLRGFEPRNIQEWNKHNWTGGCVRRTPLQCERAINKTTSTKEDVFLKLQKVKVPDFAEGLAVPQEMCISLCLSNCSCTAYSFADGIGCMSWTGNLLDIHQLQDGGLDLYVRAAYAELDQRKNKTIIIISTVIIGTFIIVICAYIMWRRPSNQPAKLWLLTKSARKKNNKSFQLFNKGGSPEGYASDHVIGEMSQVKLQELVMFDFEKLASATDNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRASGQGLEEFMNEVVLICKLQHRNLVRLVGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNNLLNWSTRYGIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDEELNPKISDFGMARIFGGGVDQANTSRIVGTYGYMFPEYAMQGLFSEKSDVFSFGVLLLEILTGRRNSSFCDNERSLSLIGFVWMQWMENNILSLIDREIYDPSHHSYILRYIHIALLCVQELAVDRPTMAAVIYMLNSEAALLPPSKPAFILMENMLNSKRPEECQSVSSINNASITEIRGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01679 843 Gene3D - 23 149 IPR036426 -
Vivi6g01679 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vivi6g01679 843 CDD B_lectin 38 147 IPR001480 -
Vivi6g01679 843 SMART ntp_6 351 423 IPR003609 -
Vivi6g01679 843 CDD STKc_IRAK 532 798 - -
Vivi6g01679 843 FunFam receptor-like serine/threonine-protein kinase SD1-8 500 601 - -
Vivi6g01679 843 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Vivi6g01679 843 SMART blect_4 35 151 IPR001480 -
Vivi6g01679 843 SMART serkin_6 526 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01679 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 148 - -
Vivi6g01679 843 ProSiteProfiles Protein kinase domain profile. 526 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01679 843 Pfam Protein tyrosine and serine/threonine kinase 527 795 IPR001245 GO:0004672|GO:0006468
Vivi6g01679 843 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Vivi6g01679 843 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Vivi6g01679 843 SUPERFAMILY Protein kinase-like (PK-like) 511 812 IPR011009 -
Vivi6g01679 843 CDD PAN_AP_plant 337 422 - -
Vivi6g01679 843 Gene3D Transferase(Phosphotransferase) domain 1 602 803 - -
Vivi6g01679 843 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Vivi6g01679 843 Pfam D-mannose binding lectin 75 177 IPR001480 -
Vivi6g01679 843 Pfam PAN-like domain 351 409 IPR003609 -
Vivi6g01679 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 805 - -
Vivi6g01679 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 182 IPR036426 -
Vivi6g01679 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 788 - -
Vivi6g01679 843 PIRSF SRK 1 843 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01679 Vivi-Chr6 76493472 76499810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01679 505 843 Receptor kinase-like Gene Family AT4G11530 56.069 2.59e-121 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi6g01679 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01679 - - mtr:25498365 1355.89