Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01586 ATGAGGATTAGAAGGTACAGTTTGGTACGCACATGCTGGAAGGTGAAGCTGAGGACTGGTGGGATAACAGTCGTCAGAGAATGGAAGCTGCAGGTACTGCTATTACTTGGGCAGTGTTTCGGGCTGAGTTTTTATAAAAGTACTTTCCGGAAGATGCTCGTAACAAAGAGGGAGATTGAGTTCCTAGAATTGAAGCAGGGGAATATGACCGTTGATGAGTATGCTGCTCGATTCGAGGAATTGGTGAAGTATTGTTCTCATTACAATACCAATGAAGCTATGAATTCCAAGTGCATCAAGTTTGAGAACAGGCTGCGTCCCGAGATCAAACAGGGTATTGCTTTTCAAAAGATAAGGAACTATCCAGAGCTAGTGAGCAGAAGCAGAATTTATGACAATGATAACAGAGCCAGGATTGCACATTACAAAGCTGTGAACGATCGAAAGGGTAAGCATGATCGTGGGAAACCATACAGTGCTCCTGCTGATAAAGGAAAACAGAAAGTTGGTTTTCGGAAGAAGCCAAATGGGGGAGGGTTTGCTTCCAACCCCATTACTTGCTTCCGATGTGGTACCGAGGGGAACCGTGCTAATGAATGTCAGAAAGGCATGAAGAAGTGCTTCAAGTGCGGAAAAACAGGTCATGTCGTGGCGGATTGTAGAACCAGTGTGCCTACTTGCTACAACTATGGTGAGCAAGGTCACATCAGCACTCACTGTCAAAAGCCAAAGAAGTCTCAAACTAATGGGAAGGTGTTTCCATTGGTAGGGACCCAATCTATCGATGAGGACCGGTTGGTCAAAGGTACTTGTTTCATCCATAACACTCCTTTGATTGCTATTATTGATACGGGTGCGACCCACTCGTTCATTTCTGTTGACTGTGTGAAGAGATTAGGACTTGTGCCGTCTACTTTAGATCGAAAGATGACTATTGAAACTCCATCTATTTGTTCTGTGGTTACTTCTTTAGCATGCTTGAATTGTCCGTTGACTATCTTTGATAGGGATTTCAGAGTGGACTTGATTTGTTTGCCACTCAGTAATCTGGACGTTATTTTGGGAATGAACTGGTTAGAGTTCAATCGTGTGTATATTGAATGCTTTAGGAAGAGGTTCTTGTTCCTTACTCCTGAAGAGGAAGCATTGGCAGATTGGTTATCTACCAAGGAGATGAGAATATTGTTGGAGGATGAAGCTAAGATGTTTGCTGTGTTTGCTTCACTGTCTATTGAGAACAAAACATCAATTGAAGAGATACCGGTGGTGAATGAATTTCTTGAAGTATTTCCTGATGATATTACAGAGTTATCTCCGGAGAGGGAAGTTGAATTTTCTATTGATCTTGTTCCTGGTACTAGGCCTATTTCTATGGCGCCGTACATGATGTCTGCATCGGAATTGTCAGAGTTGAAGGCTCAGATTGTGGTGTTCATTGATGATATATTGATTTATTCTAAGTCTGAAGAAGATCATGCAGAACACTTGAGGATTGCGTTGCAAGTGTTGAAGGATAACAAATTATTCACAAAGTTCTCAAAGTGTGATGGAATAGCAGTTGACCCATCTAAAGTAAGTGCAGTACTTCAGTGGGAACCTCCGAAGACGGTGACGGAAATTAGAAGCTTCTTGGGTCTGGCAGGATATTATCGTAGATTTATTGAAGGATTTTCTAATTTGGCGCTGCCATTAACTCAGTTGACTAGGAAGAGTCAAGCTTTTGTATGGGATGCGGCGTGTGAGGAAAGTTTCGAAGAGTTGAAGAAGAAGCTGACAGCAGCGCCAGTGTTGATTCTGCCTAATCCAAGTGAACCGTTTGTTGTGTACTGTAATGCATCTAAAATGGGACTAGGCGGAGTGTTAATGCAAGGTGGTAAAGTGCCTCATTGTGATATTGTTGGACCAACTTCAGGAAGCACATCCTGTGTTGTAGTTATTAGAAACAACCAACTTCTTCTGGAAAATGCTGGTGATTCACGTTGTGTAATATCTCGGAAGGGACAGGCATACAATTTGCTTGAAGTAGATTGTGCTGCTTGA 2040 0.424 MRIRRYSLVRTCWKVKLRTGGITVVREWKLQVLLLLGQCFGLSFYKSTFRKMLVTKREIEFLELKQGNMTVDEYAARFEELVKYCSHYNTNEAMNSKCIKFENRLRPEIKQGIAFQKIRNYPELVSRSRIYDNDNRARIAHYKAVNDRKGKHDRGKPYSAPADKGKQKVGFRKKPNGGGFASNPITCFRCGTEGNRANECQKGMKKCFKCGKTGHVVADCRTSVPTCYNYGEQGHISTHCQKPKKSQTNGKVFPLVGTQSIDEDRLVKGTCFIHNTPLIAIIDTGATHSFISVDCVKRLGLVPSTLDRKMTIETPSICSVVTSLACLNCPLTIFDRDFRVDLICLPLSNLDVILGMNWLEFNRVYIECFRKRFLFLTPEEEALADWLSTKEMRILLEDEAKMFAVFASLSIENKTSIEEIPVVNEFLEVFPDDITELSPEREVEFSIDLVPGTRPISMAPYMMSASELSELKAQIVVFIDDILIYSKSEEDHAEHLRIALQVLKDNKLFTKFSKCDGIAVDPSKVSAVLQWEPPKTVTEIRSFLGLAGYYRRFIEGFSNLALPLTQLTRKSQAFVWDAACEESFEELKKKLTAAPVLILPNPSEPFVVYCNASKMGLGGVLMQGGKVPHCDIVGPTSGSTSCVVVIRNNQLLLENAGDSRCVISRKGQAYNLLEVDCAA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01586 679 SUPERFAMILY PP2C-like 634 671 IPR036457 -
Vivi6g01586 679 SUPERFAMILY Retrovirus zinc finger-like domains 181 223 IPR036875 GO:0003676|GO:0008270
Vivi6g01586 679 ProSiteProfiles Zinc finger CCHC-type profile. 187 202 IPR001878 GO:0003676|GO:0008270
Vivi6g01586 679 SMART c2hcfinal6 186 202 IPR001878 GO:0003676|GO:0008270
Vivi6g01586 679 SMART c2hcfinal6 226 242 IPR001878 GO:0003676|GO:0008270
Vivi6g01586 679 SMART c2hcfinal6 206 222 IPR001878 GO:0003676|GO:0008270
Vivi6g01586 679 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 475 623 - -
Vivi6g01586 679 Gene3D - 523 605 IPR043128 -
Vivi6g01586 679 FunFam Transposon Tf2-6 polyprotein-like Protein 523 612 - -
Vivi6g01586 679 Gene3D Acid Proteases 257 387 IPR021109 -
Vivi6g01586 679 CDD retropepsin_like 270 360 - -
Vivi6g01586 679 ProSiteProfiles Zinc finger CCHC-type profile. 206 221 IPR001878 GO:0003676|GO:0008270
Vivi6g01586 679 Pfam Retroviral aspartyl protease 248 379 - -
Vivi6g01586 679 Gene3D - 404 519 IPR043128 -
Vivi6g01586 679 Pfam Retrotransposon gag protein 55 99 IPR005162 -
Vivi6g01586 679 Gene3D - 622 676 IPR036457 -
Vivi6g01586 679 SUPERFAMILY Acid proteases 262 366 IPR021109 -
Vivi6g01586 679 MobiDBLite consensus disorder prediction 146 170 - -
Vivi6g01586 679 SUPERFAMILY DNA/RNA polymerases 473 625 IPR043502 -
Vivi6g01586 679 Pfam RNase H-like domain found in reverse transcriptase 576 628 IPR041577 -
Vivi6g01586 679 Pfam Zinc knuckle 205 221 IPR001878 GO:0003676|GO:0008270
Vivi6g01586 679 Pfam Protein phosphatase 2C 636 672 IPR001932 -
Vivi6g01586 679 Gene3D - 147 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01586 Vivi-Chr6 72104320 72111969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01586 628 672 PP2C-type Phosphatase Gene Family AT4G31860 71.111 2.25e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01586 - - vvo:131613856 1375.92