Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01572 ATGATAGTGATTCTTCAAAATTCAACTCCGACGATTGCACGTTACTTTTTTTCTAATGAGATCAAGAAGTGTTGTAACCAAATAATCATTTCATCGAATCATTGTGTAGATGCATATATTTTTCTATGTATCAGTGATATTTTATTCCATGGACAGAAACAACATGGAGAGGCTGCTATTGATAATTGTCAAATCTTGAAGAACAAAATACATTCGTTAAAAGAAAAGATCCAAGACGAGCGACTTAAATCAATTAAAGATAAACTTTGGATAAATAGGGAGAATCTTCGGTTTCAACTTTCCGAGGTCATGGCAGCAGTGTCAAGAAATACCTCATTACAGACCGAGGAAGTTAACGCTAAAATGCTTTCTTCAAGAATTGACAATCCTGTCAGTAAGTTTAGTGGTTTCCGTCAGGGTTTAGGAAGGAGAGAACAGATACAAAATCAAGATGTATCCTTTGAGAAAAGTTTCAACTTACCAAGCTCTGAAAAGATACCTCCATATACATTTTGGTTACATTTGGCCAGGAATGAGAGAATGACCAAAGATCAATCATTTGCGGCAAGAAGAAACATATACTATCAACATGGTGGTGAAACAATGATATGTAGTGACACCGAAGAAGAGTGCAAAGAGAATAAAGAAGCTAAACATTTTTCTCAGGGTGAAGACCAAATTCTATGGATGGTATTTGAGGAACATGATTTTACTGAGGAGGCATTGAGTGTTGTTCAGAGCTGTATTGGGGGCACTCACTCAGAGATTCAGGAGAGGTATAAATATCTCAAGGAAAAGGACATGCATGCTAAAAATTCTCGAGAAAGTGAATCTATTACTGGAATATGTTTGGACAAAAGTTTGAGTGCCAGTTTAAGTACTTTTGATCACTTTTTCTGTCGTCGTTGCATGATCTATAATTGTCCTTTACATGGATGTTCACAACCCTTAATATATCCTAGTGAAAAGCAATCAGTTTGGAATGAACCAGAAGGTGAGAGTAAACCCTGCAGTGATAATTGTTACCTTAAGATAGTGGATGTCAATACTTCATCAGAAAAACCAACTCTAGAGTCTTCTCCGTATAAAGAAATTAAAAAAACAGAAACTGTTGAAATGGATTATCATTTAGATCTCAATTCAGATGTTAAGGACTCAGATCTGCCAGACTCATCATTATGTGACTCAACTTCTCCTTGTGAATCTCAAAATTCTCATAAAAAGCTGAAGCGAATCCTAGAGAGCAAAGAAACTGCAAATGGAGATTATAACAAAGAAAGTGCGGAAATCACAGATAAAATAGAATTGTTGCGATTATCCAACTCAATGGAATGGCAAGTTGATGAGAAGCATAGTATATCAGATTGGAAACCTTTAGAGAAAGATTTATATTTGAAGGGAATTGAAATGTTTGGGAGAAACAGTTGTCTTATATTTCGAAACTTACTTTCTGGATTCAAGACTTGCACGGAAATAGCCAGCTACATGCGTGTTGAAGAAGCGGCCCGTAGATCCATAGATGAAAATGGAAAATTTGATGCAAAGTGCACTGACCATGAGATGCGATCAAGTTTAAGGTCATCTAAAAAAAAAGGAAAGAGCAAGCAATTCAAATATTTACCAAAGACTCCACGCCTCAAGCCGAATAGAATTAATGCTGGAGGAAACATACTCCTTACGCATTATAGACCTTGTGAGTGTCAAGGAAAGTGTGGGAAACAATGTTCTTGTCGTCTTAATGGATATTGCTGTGAAAAGTATTGCGGGTGTGCTAAACTATGCGGAAATCGGTTCAGAGGATGCCATTGTGTTATAACTCAATGCAGAAAACGAAACTGTCCATGCTTTGCAGCAAATCGGGAATGTGACCCAGATGTCTGTAGAAATTGTTGGGTTAGTTGTGGTGATGGTTCATCAGGAGAGCCACCTCATCATGGAGAAAATGAATGTGAAAACATGAATCTTTCTTTAGGGAAAAAACAAAGGATTCTTTTAGCCAAGTCTGATGTTGCTGGATGGGGAGCCTTCTTAAAGAATCCTGCCAACAAAGATGATTTTTTAGGAGAGTATACAGGTGAATTAATATCTCATACAGAAGCAGAGAAGCGTGGTAAATTGTATGAGCGTGCAGACTTCTCTTTTCTTTTTGACTTGGATGATGAGTATGTTATTGATGCTTATCGCAAAGGAGATAAGTTAAAATTTGCAAACCACTCCTCAAAACCCAACTGTTATGCAAAGGGTATGTTTGTTCGTGGAGACCATCGAGTAGGCATATTTGCTGGGGAACGCATTGAAGCTGGTGAGGAACTTTTCTATGATTACAAGTATGCTGCAAATCACAGAGCACCTGCATGGTTTGTTAAAGCCAATAATGCTGCCAAGAAAAAAGAACTTGCAAATTCTCATGGCAAAGCCAAGAAACGCTAG 2430 0.3741 MIVILQNSTPTIARYFFSNEIKKCCNQIIISSNHCVDAYIFLCISDILFHGQKQHGEAAIDNCQILKNKIHSLKEKIQDERLKSIKDKLWINRENLRFQLSEVMAAVSRNTSLQTEEVNAKMLSSRIDNPVSKFSGFRQGLGRREQIQNQDVSFEKSFNLPSSEKIPPYTFWLHLARNERMTKDQSFAARRNIYYQHGGETMICSDTEEECKENKEAKHFSQGEDQILWMVFEEHDFTEEALSVVQSCIGGTHSEIQERYKYLKEKDMHAKNSRESESITGICLDKSLSASLSTFDHFFCRRCMIYNCPLHGCSQPLIYPSEKQSVWNEPEGESKPCSDNCYLKIVDVNTSSEKPTLESSPYKEIKKTETVEMDYHLDLNSDVKDSDLPDSSLCDSTSPCESQNSHKKLKRILESKETANGDYNKESAEITDKIELLRLSNSMEWQVDEKHSISDWKPLEKDLYLKGIEMFGRNSCLIFRNLLSGFKTCTEIASYMRVEEAARRSIDENGKFDAKCTDHEMRSSLRSSKKKGKSKQFKYLPKTPRLKPNRINAGGNILLTHYRPCECQGKCGKQCSCRLNGYCCEKYCGCAKLCGNRFRGCHCVITQCRKRNCPCFAANRECDPDVCRNCWVSCGDGSSGEPPHHGENECENMNLSLGKKQRILLAKSDVAGWGAFLKNPANKDDFLGEYTGELISHTEAEKRGKLYERADFSFLFDLDDEYVIDAYRKGDKLKFANHSSKPNCYAKGMFVRGDHRVGIFAGERIEAGEELFYDYKYAANHRAPAWFVKANNAAKKKELANSHGKAKKR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01572 809 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 66 791 IPR045318 GO:0006338|GO:0042054
Vivi6g01572 809 Gene3D SET domain 562 778 IPR046341 -
Vivi6g01572 809 SUPERFAMILY SET domain 535 777 IPR046341 -
Vivi6g01572 809 Pfam CXC domain 600 631 IPR041355 -
Vivi6g01572 809 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 809 IPR025778 GO:0031519
Vivi6g01572 809 CDD SET_EZH 661 777 - -
Vivi6g01572 809 ProSiteProfiles CXC domain profile. 541 647 IPR026489 -
Vivi6g01572 809 SMART set_7 661 782 IPR001214 GO:0005515
Vivi6g01572 809 FunFam Putative histone-lysine N-methyltransferase EZH2 562 778 - -
Vivi6g01572 809 Coils Coil 63 83 - -
Vivi6g01572 809 ProSiteProfiles SET domain profile. 661 776 IPR001214 GO:0005515
Vivi6g01572 809 SMART CXC_2 596 633 IPR033467 -
Vivi6g01572 809 Pfam SET domain 672 775 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01572 Vivi-Chr6 71885821 71907731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01572 650 775 C2H2 Transcription Factor Family AT2G23740 29.371 4.43e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi6g01572 SET 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01572 - - vvo:131609215 1651.72