Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01545 ATGGACGAAGACTTCGACATCCCCCAACCCGAAGAAATGAACGAGGATTTCGATCTCCCGGAAGACAAAGTAGGCGAAGAGAGAGACCTCAATGATCTCGGCCTCAAGAAGAAGCTTCTCAAGGAAGGTGAAGGATGGGACACTCCCGAAACCGGAGACGAAGTTCAAGTTCTCTACACTGGGACTTTGGTTGATGGAACTAAGTTTGATGCAAGTCTTGATAGAGATCAGCCTTTCACCTTTCAGCTTGGATCAGGGCAAGTAATTCAAGGATGGGATGAAGGTATTAGAACCATGAAGAAAGGTGAAATTGCACTCTTCACCATCCCACCCACGCTAGCTTATGGTGAATCTGGTTCACCTCCCACAATTCCTCCTAATGCGACACTCCTATTCGAAATTGAGCTGTTGTCTTGGACGAGTGTGAAGGACATATCTAAAGATGGCGGTATATTTAAGAGGATACTCAGTGAAGGGGAGAAATGGGAGAACCCCAAGGATCCTGATGAAGCATTGGTTAAGTACGAGGTTCGTCTGGATGATGGAAAGGTTGTAGCGAAGTCTGATGGAGTGGAGTTCACTGTCAGTGAGGGTCATTATTGCCCTGCAATCTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTATTAGTAAAGCCTCAATATGGATTTGGTGAGAAGGGGAAACCAGCACATGGCGATGAAGGTGCAGTTCCACCAAATGCATCACTACAGATTACACTTGAGTTGGTTTCTTGGAAGACTGTTTCAGATGTGACTAGCGACAAGAAGGTTATAAAGAAGATCCTCAAGGAAGGGGAAGGTTTTGAGCGTCCAAATGAAGGGGCCATTGTAAAATTGAAACTAGTTGGTAAGCTGCAAGATGGTACTGTCTTTTTCAAAAAGGGCCGTGACGAAGAAGACAAGCTGTTCGAATTCAAAACAGACGAGGAGCAAGTCATTGATGGACTTGATAAAGCTGTATTGACTATGAAGAAGGGTGAGGTAGCATTATTGACCATTGCTCCCGAGTATGCATTTGGCGCATCAGAATCCCAACAGGAGTCGGTTTTAATTCCGTCTAATTCAACTGTGTATTATGAAGTTGAACTAGTGTCATATGATAAGGAGAAGGAGTCTTGGGATATGAGCACCGAAGAGAAAATTGAAGTTGCTGGTAAGAAGAAAGAAGAAGGGAATGTTTTGTTTAAAGCTGGTAAATATGAAAGGGCTTCCAAAAGATACGAGAAGGCTGTGAAGAACATAGAGTATGATTCATCCTTCAGCGAGGAGGAGAGAAAGCTGTCAAAAACCTTGAAGATCGCCTCGTATCTAAACAATGCTGCTTGCAAGTTGAAGTTGAAAGAGTACAAAGATGCAGAGAGATTGTGTACCAAGGTGTTGGACATTGAGAGCACAAACGTGAAAGGCCTCTATAGAAGGGCCCAGGCAAGCATGCAGTTGGGTGACTTGGATTTGGCTGAAATTGATGTTAAAAAAGCTCTTGAGGTTGAACCTGACAACAGGGAAGTAAAGCTGGAGTACAGGAATTTGAAGGAAATGATAAAGGAGTACAATAAAAAGCAGGCGAAATTTTATGGAAATATGTTCAGCTTGACAAAGGCTTGA 1638 0.4328 MDEDFDIPQPEEMNEDFDLPEDKVGEERDLNDLGLKKKLLKEGEGWDTPETGDEVQVLYTGTLVDGTKFDASLDRDQPFTFQLGSGQVIQGWDEGIRTMKKGEIALFTIPPTLAYGESGSPPTIPPNATLLFEIELLSWTSVKDISKDGGIFKRILSEGEKWENPKDPDEALVKYEVRLDDGKVVAKSDGVEFTVSEGHYCPAISKAVKTMKKGEKVILLVKPQYGFGEKGKPAHGDEGAVPPNASLQITLELVSWKTVSDVTSDKKVIKKILKEGEGFERPNEGAIVKLKLVGKLQDGTVFFKKGRDEEDKLFEFKTDEEQVIDGLDKAVLTMKKGEVALLTIAPEYAFGASESQQESVLIPSNSTVYYEVELVSYDKEKESWDMSTEEKIEVAGKKKEEGNVLFKAGKYERASKRYEKAVKNIEYDSSFSEEERKLSKTLKIASYLNNAACKLKLKEYKDAERLCTKVLDIESTNVKGLYRRAQASMQLGDLDLAEIDVKKALEVEPDNREVKLEYRNLKEMIKEYNKKQAKFYGNMFSLTKA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01545 545 Coils Coil 511 531 - -
Vivi6g01545 545 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g01545 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Vivi6g01545 545 Gene3D - 258 378 IPR046357 GO:0003755
Vivi6g01545 545 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g01545 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 378 IPR001179 GO:0003755
Vivi6g01545 545 SUPERFAMILY FKBP-like 259 395 - -
Vivi6g01545 545 SUPERFAMILY FKBP-like 23 151 - -
Vivi6g01545 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 148 260 - -
Vivi6g01545 545 FunFam Peptidylprolyl isomerase 258 380 - -
Vivi6g01545 545 FunFam Peptidylprolyl isomerase 143 257 - -
Vivi6g01545 545 Gene3D - 28 143 IPR046357 GO:0003755
Vivi6g01545 545 SUPERFAMILY FKBP-like 144 260 - -
Vivi6g01545 545 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Vivi6g01545 545 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Vivi6g01545 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Vivi6g01545 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 375 IPR001179 GO:0003755
Vivi6g01545 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 253 IPR001179 GO:0003755
Vivi6g01545 545 Gene3D - 144 257 IPR046357 GO:0003755
Vivi6g01545 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Vivi6g01545 545 Pfam Tetratricopeptide repeat 479 511 IPR019734 GO:0005515
Vivi6g01545 545 SMART tpr_5 478 511 IPR019734 GO:0005515
Vivi6g01545 545 SMART tpr_5 444 477 IPR019734 GO:0005515
Vivi6g01545 545 SMART tpr_5 395 428 IPR019734 GO:0005515
Vivi6g01545 545 FunFam Peptidylprolyl isomerase 383 538 - -
Vivi6g01545 545 SUPERFAMILY TPR-like 383 540 IPR011990 GO:0005515
Vivi6g01545 545 FunFam Peptidyl-prolyl cis-trans isomerase 28 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01545 Vivi-Chr6 70983698 70989216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01545 23 541 Calmodulin-binding Proteins AT3G25230 74.374 0.0 791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01545 6 70983698 70989216 Vivi7g03898 7 105006326 105008450 PCT