Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01540 ATGGATAATGGTGCAGATGCTAATGATGTTGAAATGAACAGAGGTAGTTATGTGGATAATGAAGAAGGAAAAGAGGATTTGGATGATTACAGAGCTATGGGTGAAATATTAGATGATGATATAAGAGAGATGAAATTTGAATCAGAGAAAAAAGCTTGTGAGTTTTATGAAACATATGCAGAATATCATGGGTTTGCTGTAAGAAAAGATGAGCTTGACCGTGATTTCAAAAATAATATTATTATGCGCCAATTGGTTTGTAATAGAGAGGGGAAAAGACATAAAAAACATATGTTAAGGGTGGACCGACATAGAGAGCCAAGGCCAATCACTCGAACAGGTTGTCTTGCTCGGTTGCGTGTGGCGTATGATGTTATGACTAGGAGTTGGAGAGTTATTGCATTTGAATCCGCTCATAATCATAAGTTAACTCCACAACGGTTTGTTCATTTTATTCCTAAGTATCGTCGACTGAGTGAAGCTGATAAAGCGCTTGTTGATGGCTTGCATACATGTGGTGTTAGAACATGTCATATTTTGGGTTTTATGTTGGGTCAGAAAGGTGGTCATGAATATTTGGGATTTATCAAGAAGGACCTATATAATTATTTTAGTAATGGAGCCAAGGCTAAAAGAGAAAATGGAGATGCTTTTGCTGCTTTGTCTTATTTACAGGCTAAAGCCGACAATGATCCGATGTTTTTTTCGAAGTTTACCACAACAGAGGATGGTCGTCTACAAAATTTATTTTGGTCAGATGGAACTAGCCGATTTGACTTTGAATGTTTTGACGAAAAGACAGAGACATATAAGTGGGTTTTAAATGCCTTTTCTGAAGCAATGTTCCATAAATGTCCAAATGTGTTTGTTACTGACGGAGATGGTGCGATGCGGGAAGCTATTAGAGTTGAATTTCCAAATGCGTCACATCGCCTTTGTTTATGGCATTTACATCAAAATTCTATTGAGAATGTCAAGAATACAAAGTTCCTAGAAGAGTTTAAGTCATTGATATATGCTAACTATACCCCCGAGACATTTGAAGATGAGTGGAAGAGGATTATTGATGATAATGGTCTATCAGATAACAAATGGGTTAAGAAAACTTATGAGATAAAGAAAATGTGGTCGAGTGCGTACATGCGAGACACACTTTTTTGTGGTATAAGAACTACATCAATGTGTGAAGGTATCAATTCATTTATCCAGGGGTATGTGGACAATAAAAACAGTCTTGTGGATTTCATGCAGAATTTTGAAAGAGCTTTGAAAGAATACAGACATAACGAATTATTGTCTGATTTTAAGTCGTTCTATTATGAACCCGTGTTGACAAGTGCTTTAAAAGGAATTGAGACTGGAGCATCAGAGATATTTACATGTAAAAAATTTAGGGATGTTAAAAATGAGATAGAAGGTGCAGCTGCATTGAATATCATTGACAGAATTGAGATTAGAATTCCGTGCTCTCACATTATTTGTGCCATGAGGCATGAGCATATGAATGTGTTTCCAAAAAGTTTGATTTGTAAGAGATGGACTAAATCAGCCAAGGATGATCACATTGCGTCGGTGTTTTCTGAAGAAAGTGATTCTGAAAAGTTGTTCATGTTTCGTAGAGGCGCAATGGTAGACTTAGAATTTGATTTCGCGGTTCCGGCGACGGAGCTATTTGCGATTCAAAACGACGTGGTGTTCATAGCGTTGAATCAGGGGAGATGGTCGCGTATTAGGCTGCCTGCGTCGGAATCGGAAGCGATCGCGGTGGCTGCAGGGCGGAGTCGTAGCTTCGTCGGAATGGATGGAGATCGCGTCGGACTCCCTGCCGGAAACGCTGGCCGGTGGCTGGGAGCAGTCCAATCATGGGTGTTTAGGTTATCTCTATTTGATTTTTCTGAAATGCAAAATTGA 1911 0.3888 MDNGADANDVEMNRGSYVDNEEGKEDLDDYRAMGEILDDDIREMKFESEKKACEFYETYAEYHGFAVRKDELDRDFKNNIIMRQLVCNREGKRHKKHMLRVDRHREPRPITRTGCLARLRVAYDVMTRSWRVIAFESAHNHKLTPQRFVHFIPKYRRLSEADKALVDGLHTCGVRTCHILGFMLGQKGGHEYLGFIKKDLYNYFSNGAKAKRENGDAFAALSYLQAKADNDPMFFSKFTTTEDGRLQNLFWSDGTSRFDFECFDEKTETYKWVLNAFSEAMFHKCPNVFVTDGDGAMREAIRVEFPNASHRLCLWHLHQNSIENVKNTKFLEEFKSLIYANYTPETFEDEWKRIIDDNGLSDNKWVKKTYEIKKMWSSAYMRDTLFCGIRTTSMCEGINSFIQGYVDNKNSLVDFMQNFERALKEYRHNELLSDFKSFYYEPVLTSALKGIETGASEIFTCKKFRDVKNEIEGAAALNIIDRIEIRIPCSHIICAMRHEHMNVFPKSLICKRWTKSAKDDHIASVFSEESDSEKLFMFRRGAMVDLEFDFAVPATELFAIQNDVVFIALNQGRWSRIRLPASESEAIAVAAGRSRSFVGMDGDRVGLPAGNAGRWLGAVQSWVFRLSLFDFSEMQN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01540 636 Pfam FAR1 DNA-binding domain 54 144 IPR004330 -
Vivi6g01540 636 PANTHER OS01G0519700 PROTEIN 41 479 - -
Vivi6g01540 636 Pfam MULE transposase domain 264 320 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01540 Vivi-Chr6 69996112 69998341 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g01540 FAR1 1.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01540 - K17604 vvo:131613837 1310.82