Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01524 ATGGAAAATCAATTTTTTTCAAACAATAATCTTCATTTTGAACAATCACATCCAACATGGCAATCACTTTCACTTTCATCCGAACAACAACAACAACAGAATAATCAAGATTGTTTCTACACACCAACAGATCAATGTGTTCATCAATTCGATTCCGCGCTTAGCTCAATGGTATCTTCACCAGCAGCTTCCAACTCCAACATGTCAAATGAAAACTTTGTCATAAGAGAATTGATTGGAAAATTGGGAAACATTGGTAATTGTTCTGATGAGATCTCACACACTTTGGTTGCTGCAAACTCTTACATCAATAGCAATAACAATACTTCATGTTACAACACCCCTTTGAATTCTCCTCCTAAATTGAGCATTCAAAACATGAGTTTGAATTCGACGGTTGCCGAATTCTCAACCGATCCTGGTTTTGCTGAAAGAGCAGCAAAATTCTCTTGCTTTGGAAGTAGAAGTTTTAATGGAAGAACAACAACACAATTGAGTCAAAGGCAAAGATCTACTCCATTGATGGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAATCTCAAATTGGTACTCAAGAGAATATTCATGATCCAATTGAAGTTAACAATTCACAAGAAGAATCAACAATCTCTGAAAATGGTAACAAACCTTCTCCTTATGTGAATTCAAGGAAAAGAAAAGCATCATCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAACCCTCCAATGGCTTGTGAAGTTGGTGAAGATTCAAATTCAAAGCGCATGAAAACAAGTGAAGGTGAAAAAGTTGAAAATGGTAAAGTAAAAGCAGAGGAAGAGTCAAAAGGGGGTGCAAATAGTAATGATGGAGGTGATGAAAAACAGAATAAGAGTAACTCAAAACCTCCTGAGGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGCCATAGTCTTGCAGAAAGAGTAAGGAGGGAGAAAATAAGCGAAAGAATGAAACTTCTGCAAGATCTTGTACCGGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTGCAATCATTGCAGCGTCAAGTTGAGTTTCTATCTATGAAATTGGCTTCTGTCAACACAAGGGTGGATTTTAGTATTGAAAGCCTAATATCAAAAGATATGTTTCAATCAAATAATTCTTTGGCACACCCAATATTCTCTCAAGATTCCTCAGCACCATCCTTTTATGGGCAACAACACCAGCAAAATCCAGCAATCCACAATAACATTTCTAATGGAACTGTGCCCCACAACTCATTGGACCCATTAGAAAATGCTTTATGCCAAAACCTTGGCATGCACTTATCTTCACTCAATGGATTCCATGAAGCTGCCTCTCAGTATCCATTAGCATTCTCTGAAGATGACCTCCACACAATTGTTCAAATGGGATTTGGACAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAACGGCACAAATCAACTACCCCTATGA 1554 0.3707 MENQFFSNNNLHFEQSHPTWQSLSLSSEQQQQQNNQDCFYTPTDQCVHQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISHTLVAANSYINSNNNTSCYNTPLNSPPKLSIQNMSLNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTTQLSQRQRSTPLMENGKLSRVSSSPSLKELGSQSQIGTQENIHDPIEVNNSQEESTISENGNKPSPYVNSRKRKASSKGKTKENSTSSNPPMACEVGEDSNSKRMKTSEGEKVENGKVKAEEESKGGANSNDGGDEKQNKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRVDFSIESLISKDMFQSNNSLAHPIFSQDSSAPSFYGQQHQQNPAIHNNISNGTVPHNSLDPLENALCQNLGMHLSSLNGFHEAASQYPLAFSEDDLHTIVQMGFGQTDNRKTPIQFQNLNGTNQLPL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01524 517 MobiDBLite consensus disorder prediction 299 313 - -
Vivi6g01524 517 Gene3D - 320 394 IPR036638 GO:0046983
Vivi6g01524 517 CDD bHLH_AtBPE_like 313 398 - -
Vivi6g01524 517 MobiDBLite consensus disorder prediction 261 292 - -
Vivi6g01524 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 392 IPR036638 GO:0046983
Vivi6g01524 517 SMART finulus 329 379 IPR011598 GO:0046983
Vivi6g01524 517 Coils Coil 370 390 - -
Vivi6g01524 517 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 216 438 IPR024097 GO:0006355
Vivi6g01524 517 MobiDBLite consensus disorder prediction 159 234 - -
Vivi6g01524 517 FunFam Basic helix-loop-helix transcription factor 320 392 - -
Vivi6g01524 517 Pfam Helix-loop-helix DNA-binding domain 327 374 IPR011598 GO:0046983
Vivi6g01524 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 373 IPR011598 GO:0046983
Vivi6g01524 517 MobiDBLite consensus disorder prediction 243 257 - -
Vivi6g01524 517 MobiDBLite consensus disorder prediction 159 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01524 Vivi-Chr6 68810977 68814654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01524 1 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.622 4.11e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g01524 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01524 - - tpra:123889043 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01524 6 68810977 68814654 Vivi7g03903 7 105064922 105068096 PCT