Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01517 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACAGATGGAAAGTTGTCTCCAACAACAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTGTTCACCGAAAAATGCTTATTAGGGCATACTTATGATGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAAATATATGATAAAGTTTACTGCTGGAACGTCTATTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCCGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATACACAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAAACATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTCCCTACAGTTGTGTTGCTTCAATATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGGTCATGAAGGACTTTATTGATAGAATGCCTGAGGAGAGCAGGGTAACCCTGTCTGAACAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGTGCTACTATCGCTACAACAAAATTATTAGTAGCATCCCCGTTTGGATGGTACTATCGTGCCTGTCATATATGTTGTTTCTGTCATGTTTATGATGTTTTTATGTTGTCGGCTTTTTTAACGGAACGATTTCTTATGATGTTCAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGCTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCCGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAACTTAAGGAAAAATGGGGAACAGATGAGGAACCTATTCCAATCCAAACTGTCGTACCTGAGACTCTGGAGATTAAAGAGAGTGTTGATGAGGCTAAAACAGATGGCAATGAAGACTGTGAATTGGACCTGGAAATTACATCTGAGCACAAGCCTGATGCTGTCACACCTGGTGGTAAGAGGCATCTTCCTGCTGCATCAAGTGAATCCATTGATTTGGACGGATTACATGATGGGGAACTGTCATCAAACAAGCTGAAAAAGATAATTAAAATGGAGAAGATTGATTAG 1581 0.4035 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNNKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYDVSNFKVVPYVLAFRASGHKYMIKFTAGTSILDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYTQTESGAKKQQISMMLRDHSNNMLNCTLWETYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPVMKDFIDRMPEESRVTLSEQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATIATTKLLVASPFGWYYRACHICCFCHVYDVFMLSAFLTERFLMMFRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQLKEKWGTDEEPIPIQTVVPETLEIKESVDEAKTDGNEDCELDLEITSEHKPDAVTPGGKRHLPAASSESIDLDGLHDGELSSNKLKKIIKMEKID 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01517 526 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi6g01517 526 Gene3D - 256 432 IPR012340 -
Vivi6g01517 526 MobiDBLite consensus disorder prediction 478 506 - -
Vivi6g01517 526 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi6g01517 526 CDD RPA1_DBD_A_like 19 103 - -
Vivi6g01517 526 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi6g01517 526 Gene3D - 3 104 IPR012340 -
Vivi6g01517 526 Gene3D - 110 249 IPR012340 -
Vivi6g01517 526 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01517 Vivi-Chr6 67886293 67888848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01517 8 318 Core DNA Replication Machinery Family AT5G45400 21.021 1.64e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01517 - - vvo:131613993 810.831