Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01508 ATGTCTGATTATAGGTGGTATAGAGATATGTTTTTGTCTAAACTATGCCTTAGGTCAGATGGTGCAGCAGATTACTGGAAAGAAATATTTATTAGTGGTTTATCTAGGTTATTTGCAGAAAAGCCTGTTATTAGTGAGAATGCCAACAATGATTCATATGCTAGTGATTTAGAGGCTAATAATTTTCAAGAACCTTGCTTGGAAATGGAATTTGAGTCACAAGAAAATGCTTATTCTTTTTATGTTCAGTATGCTAAATGTGTTGGATTTGGTGTTTCCATCAAAAGTAGTCGCCGTTCAAAGATTTCTAGACAATTTATTGATGTCAAATATGCTTGCACAAGATATGGAAATAAACGAGAGTCGACTTCCCAAAATCCACGGCTTTGTTTGAAGGTGGATTGTAAGGCTGGCTTGCATATTAAAAGAAGATGTGATGGAAAGTGGGTTATCCATGGCTTCATTAAAGATCATAATCATGAACTTTTCCCAACATATGCACATTATTTTCCTTGTCATAGAAGCATCAATAAAGCTCAAAAGCAATGTATTGATACTTTGCAACATGTTGGAGTGAGAACAAATAAAATTTATGCCACAATGGCCAAACAACACGGAGGATATGAAAAAGTTGGTTGTTTGGAGAAAGATGTTAGAAATCATTTGGATAAGGAACGTCGTCTGAATTTAGAATCAGGAGATGCAAATGCAATGTTGGAGTGTTTTATGCTTATGCAAGAAGAAAATCCAAGATTTTTTTATGCATTTGATTTGGATGATGATGGTCGTGTAAAAAATGTATTTTGGGTGGATGCAAATGGTAGAGATGACTATCAAGAATTTGGAGATGTGATTTTATTTGATACCACATATATCACAAACAAATACAAAATGCCATTTGCTCCATTCATTGGTGTGAATAATCACTTTCAATCAAGACTCCTTGGTTGTGCATTACTAGCAAATGAGTCATCTGAGAGTTTCATATGGTTGATGAAAATATGGCTTAGGGCAATGGGCGGCAAACCTCCAAATGCAATAATAACCGATCAAGATAAAGCAATGAAAATAGTGCCACCCTATACTCCTCAACGAAATGGAGTTACAGAGAGGAAGAATGGAACGATTGTGAACATGGTGAGAATCATGTTGAAAGGAAAGAACTTTCCGAAAGAGTTACAGGGAGAAGTGGTGTCCACATCTGCATATTTGTTGAATAGGTGTCCAACAAAGAAGCTGAAAAATATTACACCTGAAGAATCTTGGTCTAGATTCAAGCCAAATATGAGTCACTTGAAGGTATTTGGTTCAATTGCGTATAGACATGTTCTGGATAAAATTATAAAGAAGTTAGATGACAAGGGAGAGCAAATGATACTTGTTGGGTATCACTCTACCGGTGGCTATAAACTCTATGACACAATTAACAAAAGAATCGTAATTAGTAGGGACATGATTATTGATGAATTAAAGGAGTGGAAACATGAATAA 1491 0.3535 MSDYRWYRDMFLSKLCLRSDGAADYWKEIFISGLSRLFAEKPVISENANNDSYASDLEANNFQEPCLEMEFESQENAYSFYVQYAKCVGFGVSIKSSRRSKISRQFIDVKYACTRYGNKRESTSQNPRLCLKVDCKAGLHIKRRCDGKWVIHGFIKDHNHELFPTYAHYFPCHRSINKAQKQCIDTLQHVGVRTNKIYATMAKQHGGYEKVGCLEKDVRNHLDKERRLNLESGDANAMLECFMLMQEENPRFFYAFDLDDDGRVKNVFWVDANGRDDYQEFGDVILFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLANESSESFIWLMKIWLRAMGGKPPNAIITDQDKAMKIVPPYTPQRNGVTERKNGTIVNMVRIMLKGKNFPKELQGEVVSTSAYLLNRCPTKKLKNITPEESWSRFKPNMSHLKVFGSIAYRHVLDKIIKKLDDKGEQMILVGYHSTGGYKLYDTINKRIVISRDMIIDELKEWKHE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01508 496 Gene3D - 308 438 IPR036397 GO:0003676
Vivi6g01508 496 PANTHER OS01G0519700 PROTEIN 58 356 - -
Vivi6g01508 496 Pfam MULE transposase domain 284 356 IPR018289 -
Vivi6g01508 496 Pfam FAR1 DNA-binding domain 79 164 IPR004330 -
Vivi6g01508 496 ProSiteProfiles Integrase catalytic domain profile. 360 426 IPR001584 GO:0015074
Vivi6g01508 496 SUPERFAMILY Ribonuclease H-like 285 435 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01508 Vivi-Chr6 67567584 67591541 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g01508 FAR1 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01508 - - vvo:131613809 1013.83