Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01506 ATGGCAAAACCAGGGGTGTTGGATTCTGATCCAGAGATTATGGTGAAGAAAGTGTTGGAGATGAAGAAGGAGTTAAAGAAGCTTGTGAAGTCCATTGTTGAGGATGAAGATACAAGCATTGAAGCTATTGATAAAGCAAAAGAAACTCTTTGTGTTCTTAAGGATTTGAAGCTTAGAAGGAAATCTCAATCTTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGCCCACTTTCCAAAGAATTGATGAGAGATCCTGTCATTGTTGCTTCTGGCCAGACATATGATAGACCATTCATTCAAAGGTGGTTGAATGCTGGAAATAGGACATGTCCTCAAACTCATCAAGTTCTCTCACACACTCTCCTTACTCCAAATCATCTTATAAGAGATATGATAGAAAAATGGTCTAAAAATCAAGGGATTGAATTGTGCAATGTTATTAGTTATATCAATGGTGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTAGAGAAAATGTCATCAACACTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGGTTGTTGACAAAGAAGCATCCTTGTTTTAGAGTACTTTTTTGCGATTTCGAAGATGCAATTCCTCAGTTGCTTAAGCCTATTTGCGAAGGAAACAGTATTAGCCTCGATCTTCAAGAAGACGTGATCACGACGCTTCTCAATATCTCGATTCATGACAACAATAAAAAACAAGTAGCCGAAACTCCAATGGTGATTCAACTCCTTATGAAGTCACTGAGATGTGGAACAATCGAGACACGAGCCAATGCTGCAGCGACCCTTTTCACGTTATCAGCACTAGACTCGAACAAAGAACTTATAGGAAAATCGAACGCATTGAAACCTCTTATCGATTTATTAGAAGAAGGGAATCCCTTAACTATGAAAGATGTTGCTTCAGCAATATTCACCTTATGTATGATGCATGACAACAAGGCAAGAGCGGTGAAAGAAGGTGCGGTTAGAGTGATTATGACGAAGATGAAGAACCGACTTCATGTTGACGAATTACTAGCTATCCTCGCTCTACTTTCGACTCATCAGAAAGCTGTTCTTGAAATGGCAGAGCTTGGAGCTGTTCCTTGTTTGCTAAGCATCATGCGAGAGAGCTCGTGCGAGCGCAATAAGGAGAATTGCGTAGCGATTCTTCAAACTATATGTCTATATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAAGAGAATAGCTATAGAACAATATCTGAACTTGCAAAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGGTTGCATAGGGTTGTTAATATCACACACACTGCATAA 1374 0.3872 MAKPGVLDSDPEIMVKKVLEMKKELKKLVKSIVEDEDTSIEAIDKAKETLCVLKDLKLRRKSQSSMSFKINKNVTFPDEFKCPLSKELMRDPVIVASGQTYDRPFIQRWLNAGNRTCPQTHQVLSHTLLTPNHLIRDMIEKWSKNQGIELCNVISYINGEGAKEADQNHFLCLLEKMSSTLCDQKEAAKQLRLLTKKHPCFRVLFCDFEDAIPQLLKPICEGNSISLDLQEDVITTLLNISIHDNNKKQVAETPMVIQLLMKSLRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLTMKDVASAIFTLCMMHDNKARAVKEGAVRVIMTKMKNRLHVDELLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSYRTISELAKNGTSRAKRKASGILERLHRVVNITHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01506 457 Gene3D - 152 452 IPR011989 -
Vivi6g01506 457 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Vivi6g01506 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Vivi6g01506 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Vivi6g01506 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Vivi6g01506 457 FunFam RING-type E3 ubiquitin transferase 352 453 - -
Vivi6g01506 457 SUPERFAMILY RING/U-box 75 153 - -
Vivi6g01506 457 CDD RING-Ubox_PUB 77 129 IPR045210 -
Vivi6g01506 457 PANTHER U BOX DOMAIN-CONTAINING 43 446 - -
Vivi6g01506 457 SUPERFAMILY ARM repeat 181 447 IPR016024 -
Vivi6g01506 457 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01506 Vivi-Chr6 67510059 67513161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01506 138 457 U-box Gene Family AT3G07360 59.385 9.36e-124 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01506 - - gmx:100777031 696.041