Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01498 ATGAAGTTCAACGTTGCTAACCCCACCACTGGATGCCAGAAGAAGCTTGAGATCGATGATGATCAGAAACTGAGAGCATTTTGGGACAAGAGGATTTCACAAGAGGTCAATGGAGATGCCCTTGGTGAGGAATTTAAGGGTTATGTCTTTAAAATTACTGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACCCCTGGCCGTGTTCGACTTTTGCTTCACCGGGGAACTCCTTGCTTCCGAGGACATGGAAGACGTACTGGAGAGCGCAGAAGAAAATCTGTTCGTGGGTGCATTGTTAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATTTACCTGGCCTAACCGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTACGTCAACACCTACCGTAGAACATTTACAACAAAAGCTGGGAAAAAGCAGAGCAAAGCTCCAAAGATTCAACGTCTGGTTACTCCTCTCACTCTCCAAAGAAAGCGAGCAAGAATTGCCGATAAGAAGAAGAGAATTGCCAAGGCCAAATCAGAGGCGGCTGATTACCAGAAGCTTCTTGCTTCAAGGTTGAAGGAGCAGAGGGATCGTCGCAGTGAGAGTTTAGCCAAGAAGAGATCTAGGATTTCCAGTGCTACCAAGGCACCTATCACCGCATAG 750 0.468 MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKQSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRDRRSESLAKKRSRISSATKAPITA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01498 249 Coils Coil 189 216 - -
Vivi6g01498 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 239 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vivi6g01498 249 Gene3D - 133 234 - -
Vivi6g01498 249 MobiDBLite consensus disorder prediction 221 249 - -
Vivi6g01498 249 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vivi6g01498 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vivi6g01498 249 MobiDBLite consensus disorder prediction 221 237 - -
Vivi6g01498 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vivi6g01498 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01498 Vivi-Chr6 67073566 67075908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01498 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.896 3.65e-124 349