Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01490 ATGGCAATTCAGTGGAATAAAGTTTTGGCAGCATTTTGTTTGATTGCAATTTTGCTTGAACCTTTGTTTTTCTACCTGGTCTATATTGACAAGGAAAACAAGTGTTTTAGCATTGATTGGGAGACAACAACATACCTTGTTTTACTTAGAAGCTTTGTTGATCTTATTTATTTTCTGAATATGATCGTAAAGTTTAGGTTGGCTTATATTTCTTTTAGGTCTTCGGTGGTGGCTAGCTTGTTTCTTTTCTTTGACTTATTGATTGTATTACCTCTTCCTCAGATAATTATAATGTTTATCCTACCGACTTCACTGGGGTTAACAGGAGAAAAGTATATTGGGAGTCTTCTACACTTACCGATTCTTTTACAATATATGTATCGTATGGTCAGATTTTCGCCTCTAATACTTGAGTTGTCTCCAACCGGAGTTATATTTGAGTCAGCCAAGACAAATATCAGTAAAAGTATTCTATTTTGTATTCTATTGGTCAATGTTGTGGCTTCATTGTGGTACCTCTCTGGAACACAGAGAGTTAATCAATGTTTGCAAGAGGCTTGCCATCTCGCTAATGTACCTAATTGCATGAAATTGATTAATTGTAATTCTGAATGGCGGAATATGTCAGCTACATGGAGCAGTGATAACGGTGCAAATGATTGTATGGCATCAAACAGCTTCATAAACAGATTCTCCCCTATCAGAGTCAAACATCTTTCCAGATTTCATTCTGACCATGCCGCTATTAGCATTTCTCTTGAAGCTGACGAATCTCACAACGCTGGTGGTAGAAAACGCCCTTACCTGTTTCGTTTTGAGGAGGCGTGGAGTAAGGATCCCAGGTGCGAAAGATTCGTGGAACAGATTTGGAATGAGCCCAGCAATAGAGGCCTTAATAAGTTTGAAAGGCTTAAAACTCTCGATGATTTGTTTAAAGATTATAGAAGGGGGGAGATCTCCAAGGAGATTAGACGGATTGAGGAGCAGTTGGGAAAGGATTTTTGTTGGGCGGAGGGTCGGGAGGACATTACTCGTAACAGGGCCTTGGTTCGACAACGTGATAAGCTGCTTCAAACGGAGGAACTTATGTGGAGACAAAGGAGTAGGGTTATGTGGCTTAAGTGTGGTGATAAGAACTCAAAATTTTTCCATGGTAAAGCGAATCAGCGGCGCAAGACAAACTCTATCAAGAAGATCAAGGATGAACACGGTCACTGGTGGAGAGGACAAGCGAACTGCGAACGAATTCTGGTGACTTATTTTGATGATATTTTCTCTTCTACCATGCCCACTGATACTGATATTGTTGAGGTCTGCAAAGTTGTTAAAGGAAGATTAAAGCCTGAACATGTCAGGATCTGTGAAGAGGCTTTCTCGGCTGCTGAGGTTAAATGTGCTCTGTTCCAAATGAATCCCTTAAAGGCACCTGGACCGGATGGGCTTCCTGCACTATTTTACCAAAAGTTTTGGCATATAGTGGGAGGTGACATAAGTAAGTTAGTGCTGGACATCCTCAATAATCAAAAACATCCTGGAATCATTAACAGCACCCATATAGTTCTTATTCCCAAATGTAAAAATCCAGCCAAACCGAAGGACTTTAGGCCCATCAGTCTTTGCAATGTGGTGATGAAATTAGTGTCGAAGGTGATTGCTAACAGGTTAAAGCTTTTCCTACCGGACATCATCGATGAAGAACAGAGCGCTTTCGTCAAAGACCGACTGATTATGGATAACGCCTTGATTGCGATGGAATGTTTTCACTGGATGAAAAAGAAGGTGAAAGGGAAGAAAGGTACCATGGCCCTGAAACTTGATATGTCAAAGGCGTACGATAGACTCGAATGGAAGTTTATTGTGGAGGTCCTCTCGTCTATGGGTTTCCCTAGATCGTTGGTTGTTTTGATTGAGAAGTGTATCTCCTCGGTGTCCTACAAGGTGTTGATTAATGGCGCCCCTAGCAGAAGTTTCACACCGGAGAGGGGTCTTCGTCAAGGCGATCCCCTCTCTCCTTACCTTTTTATCCTGTGCGCTAATGTTTTTTCAGGTATGATTAAGGAAGCTGCCAGCAAGAAGGAGATTCACGGCATCAAGGTCGCTCGCAATTCCCCCATGATCACTCATTTATTCTTTGCTGACGATAGTTTGCTCTTCGCTAGAGCAACTCTGGAGGAAGCAGGCCGCATTAAGGAGATTCTCAAATCTTACGAGTGTGCCTCGGGCCAAGTGGTGAACTTTGATAAAACCGAAGTGTCTTTTAGTAAGAATGTGGGAGAGGTCACTTGCGCAAATATCCGGAACAGTCTAAATGTCAATGCCGTCTCTAATCATTCCAAGTATCTTGGGCTGCCCGTCATTCTTGGGAGATCAAAGAAGATTGTTTTCTCTATGCTGGTGGAAAGAGTTTGGAAAAAAATCAAAGGTTGGAAAGAAAAATTCCTTTCTACTGCAGGGAGGGAGGTGCTCATAAAAGCTGTAGTGCAAGCTATCCCCACTTATGTGATGAGCTGCTACAAACTTCCTATTACTGTTTGCAACGAGCTCGAAGCCTTGATTGCCAACTTTTGGTGGGGAGCGAAGAACGGGGAGCGGAAGCTGCATTGGTTGAGTTGGGAGAAGATGGCTAAGGCTAAGAACTCGGGAGGAATGGGGTTCAGAAGTATCAGTGACTTTAATACTAGTCTTCTCGGTAAACATTACTGGAGACTTCTGTCACAAGACGATTCATTGGTGGGAAAGGTTCTAAAAGGAAGGTATTTCCCCAGGGGTTCCATTGACTCTTGCGATGTTGGTTATTGCCCCAGCTATGCTTGGAGAAGTATTATGGGAGCGCGGGATGTGGTGCATCGAGGTGCGAGATGGGGAATAGGAAACGGAGAGAAGGTGAAGATCCTAAATGGCGGTTGGATTCCGGGTAATCCTGAGTTTAAACTTCTGTATGGTGCTAGAAATGTAGGAGAGGAGGATCTTGTCAGTGATCTTATTGACAAAGAGTTGGGTGTCTGGAAAAGAGAGGTTATTTATGACTCGTTCTCCCATGAAGATGCCAAGAAGATTGTTAGCATACCCCTCTCAAGGCTCCCAAACGATGACAAGTTGGTGTGGCATTTTGAAAAGAGTGGAGAATTCTCGGTAAAAACTGCGTATCACGCTACGCGCTCGCACAGGGCTTCTCTTCTCCCTGGCCCTTCTGTTTTACATAACCATAGCCTCTGGAAGCTGATTTGGAAGGCGCCCATCTACACAAGGCAGCGGAACTTTTTGTGGCGGGTGGCTAAAGATATCCTTCCCACGAGGGGGAATCTCGTCAAAAGAGGTATGCCCATTGATCCTTCATGCCCCTTCTGTCAATCCGGAATTGAGACTCTGCAGCATATTTTTATGGATTGTCACTTTGCGAAACAAGTTCTTTTCGCGTCTCCCATAGGCTACCGTACTCCCATCTGTCTTGATGTGAACTTCTGGATTCAATCTGTTCTAGAGGGCAGTGATGTCTATAGTGTTCAGCTGTTCTGTGCCTGCCTCTACAAAATCTGGGCAGCTAGAAATGTAGTGGTGTTCCAAGGGAAAGCTGTTTGCCCTATTGCAGTTGCAGGTGGTGCTTTTGATTATGTGCAGGACTTTGTTAGATGGCCTCCAGATCCTTATGGGAAAAATTTGTCTTCTACTGCGAGGAAGGATGTCTCTTTCCCCCAGGATGTCTTTGTTGCACAAGTGGATGCTGGGCTCACGGAGGCAGGCGATACGGTGTTTGGTTGTACCTTCAAGGACCCTTTCGGCAAGACGCTGATGGCTGCCAGTAAGAAGGAAAATATCCTGGTCGATCCCAGCATTGCTGAACTCTTGGCCATTAGATGGTGCATTCTCTTAGCAGCTGATCTTAAGATGAACAAGATTGTGTTCCAGTCAGACGCGTTGGTGGTGGTAGATTGTATCAATTCCATCTCTTGTAATGCCTCCCTCGATCCTATAGCGGCGGAGTGTCGGTTACTTTTGAGTTCTTTCTCTTTTAGTTCTGTTATTTTTATTCCTAGGGTCTGTAATTCTGATGCACACAATGTTGTGTTGCTTGGTAAGGCTTATGGCTCCCGGACCTGGTTAGATGGTATCCCGGGAGCGAATTCTGTATCTCCGGCTGTTTTAGGCCCTTTGATCTAA 4158 0.4394 MAIQWNKVLAAFCLIAILLEPLFFYLVYIDKENKCFSIDWETTTYLVLLRSFVDLIYFLNMIVKFRLAYISFRSSVVASLFLFFDLLIVLPLPQIIIMFILPTSLGLTGEKYIGSLLHLPILLQYMYRMVRFSPLILELSPTGVIFESAKTNISKSILFCILLVNVVASLWYLSGTQRVNQCLQEACHLANVPNCMKLINCNSEWRNMSATWSSDNGANDCMASNSFINRFSPIRVKHLSRFHSDHAAISISLEADESHNAGGRKRPYLFRFEEAWSKDPRCERFVEQIWNEPSNRGLNKFERLKTLDDLFKDYRRGEISKEIRRIEEQLGKDFCWAEGREDITRNRALVRQRDKLLQTEELMWRQRSRVMWLKCGDKNSKFFHGKANQRRKTNSIKKIKDEHGHWWRGQANCERILVTYFDDIFSSTMPTDTDIVEVCKVVKGRLKPEHVRICEEAFSAAEVKCALFQMNPLKAPGPDGLPALFYQKFWHIVGGDISKLVLDILNNQKHPGIINSTHIVLIPKCKNPAKPKDFRPISLCNVVMKLVSKVIANRLKLFLPDIIDEEQSAFVKDRLIMDNALIAMECFHWMKKKVKGKKGTMALKLDMSKAYDRLEWKFIVEVLSSMGFPRSLVVLIEKCISSVSYKVLINGAPSRSFTPERGLRQGDPLSPYLFILCANVFSGMIKEAASKKEIHGIKVARNSPMITHLFFADDSLLFARATLEEAGRIKEILKSYECASGQVVNFDKTEVSFSKNVGEVTCANIRNSLNVNAVSNHSKYLGLPVILGRSKKIVFSMLVERVWKKIKGWKEKFLSTAGREVLIKAVVQAIPTYVMSCYKLPITVCNELEALIANFWWGAKNGERKLHWLSWEKMAKAKNSGGMGFRSISDFNTSLLGKHYWRLLSQDDSLVGKVLKGRYFPRGSIDSCDVGYCPSYAWRSIMGARDVVHRGARWGIGNGEKVKILNGGWIPGNPEFKLLYGARNVGEEDLVSDLIDKELGVWKREVIYDSFSHEDAKKIVSIPLSRLPNDDKLVWHFEKSGEFSVKTAYHATRSHRASLLPGPSVLHNHSLWKLIWKAPIYTRQRNFLWRVAKDILPTRGNLVKRGMPIDPSCPFCQSGIETLQHIFMDCHFAKQVLFASPIGYRTPICLDVNFWIQSVLEGSDVYSVQLFCACLYKIWAARNVVVFQGKAVCPIAVAGGAFDYVQDFVRWPPDPYGKNLSSTARKDVSFPQDVFVAQVDAGLTEAGDTVFGCTFKDPFGKTLMAASKKENILVDPSIAELLAIRWCILLAADLKMNKIVFQSDALVVVDCINSISCNASLDPIAAECRLLLSSFSFSSVIFIPRVCNSDAHNVVLLGKAYGSRTWLDGIPGANSVSPAVLGPLI 1385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01490 1385 CDD RNase_H_like 1239 1352 IPR044730 -
Vivi6g01490 1385 SUPERFAMILY Voltage-gated potassium channels 3 175 - -
Vivi6g01490 1385 Gene3D - 1236 1360 IPR036397 GO:0003676
Vivi6g01490 1385 CDD RT_nLTR_like 519 785 - -
Vivi6g01490 1385 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 220 1344 - -
Vivi6g01490 1385 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 503 785 IPR000477 -
Vivi6g01490 1385 Pfam zinc-binding in reverse transcriptase 1043 1136 IPR026960 -
Vivi6g01490 1385 SUPERFAMILY DNA/RNA polymerases 468 759 IPR043502 -
Vivi6g01490 1385 Pfam Reverse transcriptase-like 1245 1354 IPR002156 GO:0003676|GO:0004523
Vivi6g01490 1385 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 526 784 IPR000477 -
Vivi6g01490 1385 Pfam Ion transport protein 7 210 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01490 Vivi-Chr6 66649458 66654502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01490 5 227 Ion Channels AT3G17700 40.083 5.30e-48 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01490 - - vvo:131613798 2797.3