Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01484 ATGAGGGGCATTTTGTCTCTGAGACAAACATTTAGACTTTTCAATCTTCATAATCTTGCTAAGGAAGAGACTAATAACAAAAAGGCCAATGCCTGGCTTGTAAGGGATAGCAAGAAAGAATTTATTCAATTAATTTTCATTGTATTGCAGGTTGTTGAAAATGGCATTGGTAATGAACTTGTTATGGGACTCACAACATCAAAATATCTGATCAATAAGCTTCAGACACTTGCTAAAGTGGGAATAGATAAGGTCCATTTTATGAAAGGTCAAGTCGCTAGAGCTATTTCTTCTTCGCCAAGTTTGGTATGCAACGACATTAGTGATGGACAAGAAGCTATTTGCATAATTGCAACCAATGAATTTGATGATCCTCCCACTGCACCTACTGGTTTTACATATATTATGTCAAATAAAGTTTCAAAACATGTCAAGATTCCACCAAGGACTCATGGATGTCATTGCCAAGGAAGTTGTAGAAATATTAATATATGTTCATGTACTAATTTTCTTAATGGCTCTAAGTTTCCTTACACAAACGATAATAGATTAATAGAGCCTCGAGACATCGTAGTGGAATGTGGGCCGCAGTGTGGATGCGGGCCTAACTGTGGAAATAAAATTTCCCAAAAGGATTTGAATTATAGACTTGAGGTTTATCGTACAGTCAAAAAAGGATGGGCTGTTAGAACATGGGACTTTATACCTTCTGGTGCACCAGTAATAGAATATATTGGTGTACTAAGTAGAGACGATAAATTAGATAATTCAATTATCAATGACTACATATTTGATATTGATTGCTTGCACACAATCAATGGATTGGATGGAAGAAATAAAAGGATAGGTGATGTAATACTACCAAAAAACAAATCATATAAAAAAAAAGTCAGCGAAATAGAAAAAGATCCCGAATTTTGTATTGATGCAGGTTCTTTCGGAAATGTTTCAAGGTTTATCAACCACAGTTGTGAGCCAAACCTTTTTGTACAATGTGTTCTCAACAATCACCTTGATGTTAGACTAGCTCGTCTGATGTTGTTTGCAGCACATGACATACCTCCCTACCAGGAACTGACTTATGATTATGGATATAGACTTGATAGTGTGGTTGATTCAAATGGAAAAATCAAACAGCTTCAATGTCATTGTGGTGCAAAGAAATGTCGTAAGCGTTTGTACTAG 1185 0.357 MRGILSLRQTFRLFNLHNLAKEETNNKKANAWLVRDSKKEFIQLIFIVLQVVENGIGNELVMGLTTSKYLINKLQTLAKVGIDKVHFMKGQVARAISSSPSLVCNDISDGQEAICIIATNEFDDPPTAPTGFTYIMSNKVSKHVKIPPRTHGCHCQGSCRNINICSCTNFLNGSKFPYTNDNRLIEPRDIVVECGPQCGCGPNCGNKISQKDLNYRLEVYRTVKKGWAVRTWDFIPSGAPVIEYIGVLSRDDKLDNSIINDYIFDIDCLHTINGLDGRNKRIGDVILPKNKSYKKKVSEIEKDPEFCIDAGSFGNVSRFINHSCEPNLFVQCVLNNHLDVRLARLMLFAAHDIPPYQELTYDYGYRLDSVVDSNGKIKQLQCHCGAKKCRKRLY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01484 394 SUPERFAMILY SET domain 99 370 IPR046341 -
Vivi6g01484 394 Gene3D SET domain 97 394 IPR046341 -
Vivi6g01484 394 ProSiteProfiles SET domain profile. 215 364 IPR001214 GO:0005515
Vivi6g01484 394 ProSiteProfiles Post-SET domain profile. 378 394 IPR003616 -
Vivi6g01484 394 SMART preset_2 104 199 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi6g01484 394 Pfam Pre-SET motif 107 207 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi6g01484 394 SMART PostSET_3 378 394 IPR003616 -
Vivi6g01484 394 ProSiteProfiles Pre-SET domain profile. 151 212 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi6g01484 394 SMART set_7 215 370 IPR001214 GO:0005515
Vivi6g01484 394 Pfam SET domain 226 364 IPR001214 GO:0005515
Vivi6g01484 394 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 84 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01484 Vivi-Chr6 66092074 66095224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01484 49 394 EF-hand Containing Proteins AT5G13960 54.441 4.21e-130 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi6g01484 SET 4.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01484 K11420 - vvo:131613791 771.155