Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01440 ATGGGTGATGTGGATCAGAAAAAGGAAAGGAAGAAGAACATGAATGGTTCAATATGGTCCATTTTCATGCATGCAGATACACAAGATTGGTTCCTTATGATTTTAGGCACCATTGGAGCCATTGGTGAAGGCTTTACTACACCAGTGATGTTGTTTCTTAGTAGCCGCGTGATTAATACTTATGGCACTTCATCTTCCACCGATGGAAACGCTTTCATCCATAATAGCAATAAGAATGCAATGGCTTGGATCTATTTGGCTTGTGCATCTTTTGTTGTTTGTTTTCTTGAGGGTTATTGTTGGACAAGGACAAGTGGAAGACAAGCTGCAAAAATGAGATGCAGATATTTGAAAGCAGTTCTTAGACAAGATGTTGCTTACTTTGATTTGCAAATCACAAGTACTTCAGAGATTATCACTAGCGTCTCCAACGACACTCTCTTAATTCAAGATGTTCTTAGCGAGAAGGTTCCAAATTTTTTGATGAACATTTCATTGTTCATTGGAAGCTACATAATGCCTTTTATAATACTATGGAGACTAGCAATTGTAGCATTTCCATTTTGCGTTATTCTAGTGATTCCTGGATTAATCTATGGCAAAACTTTGATGAGTTTATCAAGAAAGATTAGAGAAGAGTATAATCAAGCTGGTATAGTTGCAGAACAAACGCTATCTTCTATCAGAACTGTTTATTCTTTTGTGGGGGAACAGAAATCCATGAATGCTTTCTCTAAAGCTCTAGAAGGTACTGTGGAGTTGGGTTTAAAACAAGGATTAGCCAAAGGTTTGGCCATTGGAAGCAATGGTTTTGTGTTTGCCATTTGGGCTTTCTTATGTTATTATGGTAGCAAAATGGTTATGTATCATGGTGCTAGAGGAGGGACAGTTTTTGCAGTTGGAGCATGCATAACAGTTGGTGGATTAGCATTAGGAGCTAGTTTATCAAACATGAAGTATTTCTCGGATGCAATTACGGCCGGTGAAAGAATCAAGAGAGTAATAGAAAGAGTTCCTGAGATAGATTCTATCAGTGCAAAAGGAGAAATATTAGAAAATGTTTCCGGGGAAGTGGAATTCGACAATGTAGAATTTGCATACCCAACAAGACCCGAAACCGTTATCCTTAAAAAGTTTAGTCTCAAGATTCCAGCAGGAAAAACAGTTGCGTTGGTTGGTGAAAGTGGTTCAGGGAAATCGACAGTGGTATCGTTGTTGCAACGATTTTATGATCCAATTGGTGGAGAGATTCGCCTCGATGGAGTGGCTATTCATAAGTTAAAGATTAAATGGCTTAGATCAATGATGGGTTTGGTTAGTCAAGAACCTGCTTTGTTTGCAACAAGCATTAAAGAGAATATAATGTTTGGTAAAGAAGATGCTACTGAGGAAGAGATTGTTGAAGCTGCTAAAATTTGTAATGCTCATGATTTCATTTCGTTGCTACCTAATGGTTACAATACTCAGGTAGGAGAAAGAGGAGTTCAATTATCAGGTGGACAAAAACAAAGGATAGCAATTGCAAGAGCTATAATTAAAAAACCACGAATCCTTCTTTTAGACGAAGCAACCAGCGCATTAGATACTGAGTCCGAACGACTCGTTCAACAAGCACTTGACAATGCAACAACTGGTTGCACTGCCGTCATCATTGCTCATCGTCTCTCCACAATCCAAAACGCTGACATTGTTGCTGTCGTGCACGGTGGAAAAGTTACCGAGATTGGTTCACATGACGAACTTCTTCAGAACGATAACAACCTATACGCCTCCCTCGTCCGCCTTCAACAAACCAAAACTGAATCAGAAGAAACGGTTACAACTACTTTCACAAACACACAAACGGCTTCCTTGGTGGCAGACCTTACCAGTTCAGTTGAAGATAAATTTGCTAATGTTAGTATACAGAACCACGATAATGATGCTGATAATTCGGTATCTTTTTGGAGATTACTTGCATTGAATGCTCCAGAATGGAAGCAAGGGGTTTTGGGGAGTTTGAATGCAATGGTGTTTGGTGCGATTCATCCTATTTTTGCATTTACGATGGGATCGATGATATCTGTGTATTTTAATACAGATCATGTGGAGATAAAAAACAAGACTAGAGTTTTTTCACTTTGGTTTTTCGGTTTGTCGTTGATAACTTTGGTGGTTAATATTGGACAACACTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAACGTGTAAGAGAGAGCATGCTTTCTAAAATACTCAGTTTTGAAGTTGGGTGGTTCGATCAAGATCAAAATTCTAGTGGTGCGATTTCTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTAGGTGACAGAATGTTTTTGTTGGTACAAACATTTTCAGCAGTTGCAACAGCATACACTATGGGTCTAGTCATTTCATGGAGGCTCACACTTGTTACCATAGCTTCTCAACCAATTATAATTGCTTGTTTTTACACAAAAGGTGTTTTACTCAAAAGTCTTTCAAGCAAGTCTATTAAGGCCCAAGAACAAAGTAGCAAGTTAGCTTCTGAGGCAGTTTCAAATCTTAGAACCATTACTGCATTTTCATCTCAAGATAGAATCCTCAAAATGCTTGATGAGGCCCAACAAGGCCCAATTCAGGAGAATTTTCGACAAGCGTGGTTTGCTGGTCTTGGGCTTGGGTGTTCGCAATTCTTCACGGCTTGTTCTTGGTCCTTAAATTATTGGTACGGCGGGAAGCTTTTGGTTGATGGGTTGATAACGAAGAAAGCGTTGTTTGAGAGTTTTATGGTTGTGTTGACTACGGGGCGGGTCATAGGTGAAGCTGGAAGCATGACTAAAGATATTTCCAAAGGTGCAGATACCGTGAGATCGATCTTTACCATCCTAGATCGGCGCACAGAAATCGAATCAGACGAGCCTAATACGTTTAAGCCAGTTACTCTAACGGGCCAAATAGAATTTTGCGACGTGCATTTTGCATACCCCGCTAGGCCTAATGTGACTATATTTCAAGGTTTTTCAATAAAAATTGAAGCGGGAAAATCGACTGCATTGGTAGGGCAAAGTGGTTCGGGAAAGTCGACGATCATTGGACTAATAGAGAGATTCTATGATCCATTGCAAGGAAGTGTGACAATAGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAACCAACATTGATTAATGGAACCATAAGGGACAACATTGCATATGGAACAACATGTGACAAAATTGATGAAGCTGAGATAATAGAAGCAGCAAGGGTAGCCAATGCTCATGATTTCATAGCTAGTTTGAGAGATGGGTATGAGACATGGTGTGGAGACAAAGGAGTGCAACTTTCAGGGGGTCAGAAGCAAAGGATAGCAATAGCAAGGGCTATGTTAAAGAATCCAAAAGTGTTGCTACTAGATGAGGCAACAAGTGCACTAGATAACAAGTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGGTAATGGTGGGAAGAACAAGTGTGGTTGTGGCACATAGGTTGAGTACAATACAAAGTTGTGATGTTATTGCTGTTTTAGACAAAGGGAGGATGGTTGAGATTGGAACTCACAAAACATTGTTGGCTAATGGACCTTCTGGTGCTTATTACTCTTTGGTAAACCTTCAAACTAAACATGCAGTCTCAAATAAAGATAGTTTGTGA 3714 0.3953 MGDVDQKKERKKNMNGSIWSIFMHADTQDWFLMILGTIGAIGEGFTTPVMLFLSSRVINTYGTSSSTDGNAFIHNSNKNAMAWIYLACASFVVCFLEGYCWTRTSGRQAAKMRCRYLKAVLRQDVAYFDLQITSTSEIITSVSNDTLLIQDVLSEKVPNFLMNISLFIGSYIMPFIILWRLAIVAFPFCVILVIPGLIYGKTLMSLSRKIREEYNQAGIVAEQTLSSIRTVYSFVGEQKSMNAFSKALEGTVELGLKQGLAKGLAIGSNGFVFAIWAFLCYYGSKMVMYHGARGGTVFAVGACITVGGLALGASLSNMKYFSDAITAGERIKRVIERVPEIDSISAKGEILENVSGEVEFDNVEFAYPTRPETVILKKFSLKIPAGKTVALVGESGSGKSTVVSLLQRFYDPIGGEIRLDGVAIHKLKIKWLRSMMGLVSQEPALFATSIKENIMFGKEDATEEEIVEAAKICNAHDFISLLPNGYNTQVGERGVQLSGGQKQRIAIARAIIKKPRILLLDEATSALDTESERLVQQALDNATTGCTAVIIAHRLSTIQNADIVAVVHGGKVTEIGSHDELLQNDNNLYASLVRLQQTKTESEETVTTTFTNTQTASLVADLTSSVEDKFANVSIQNHDNDADNSVSFWRLLALNAPEWKQGVLGSLNAMVFGAIHPIFAFTMGSMISVYFNTDHVEIKNKTRVFSLWFFGLSLITLVVNIGQHYSFAYMGEYLTKRVRESMLSKILSFEVGWFDQDQNSSGAISSRLANDANVVRSLVGDRMFLLVQTFSAVATAYTMGLVISWRLTLVTIASQPIIIACFYTKGVLLKSLSSKSIKAQEQSSKLASEAVSNLRTITAFSSQDRILKMLDEAQQGPIQENFRQAWFAGLGLGCSQFFTACSWSLNYWYGGKLLVDGLITKKALFESFMVVLTTGRVIGEAGSMTKDISKGADTVRSIFTILDRRTEIESDEPNTFKPVTLTGQIEFCDVHFAYPARPNVTIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLQGSVTIDGMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTTCDKIDEAEIIEAARVANAHDFIASLRDGYETWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNKSEKVVQEALDKVMVGRTSVVVAHRLSTIQSCDVIAVLDKGRMVEIGTHKTLLANGPSGAYYSLVNLQTKHAVSNKDSL 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01440 1237 PANTHER ABC TRANSPORTER B FAMILY 6 675 IPR039421 -
Vivi6g01440 1237 SMART AAA_5 385 588 IPR003593 GO:0016887
Vivi6g01440 1237 SMART AAA_5 1012 1215 IPR003593 GO:0016887
Vivi6g01440 1237 FunFam ABC transporter B family member 4 348 604 - -
Vivi6g01440 1237 CDD ABC_MTABC3_MDL1_MDL2 985 1226 - -
Vivi6g01440 1237 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Vivi6g01440 1237 FunFam ABC transporter B family member 1 20 356 - -
Vivi6g01440 1237 SUPERFAMILY ABC transporter transmembrane region 650 971 IPR036640 GO:0005524|GO:0016020
Vivi6g01440 1237 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Vivi6g01440 1237 Pfam ABC transporter 376 525 IPR003439 GO:0005524
Vivi6g01440 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Vivi6g01440 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1226 IPR027417 -
Vivi6g01440 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Vivi6g01440 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 652 968 - -
Vivi6g01440 1237 ProSitePatterns ABC transporters family signature. 1126 1140 IPR017871 GO:0005524|GO:0016887
Vivi6g01440 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 669 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g01440 1237 Gene3D - 348 597 IPR027417 -
Vivi6g01440 1237 Pfam ABC transporter 1004 1154 IPR003439 GO:0005524
Vivi6g01440 1237 Gene3D ABC transporter type 1, transmembrane domain 20 896 IPR036640 GO:0005524|GO:0016020
Vivi6g01440 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 985 1223 IPR003439 GO:0005524
Vivi6g01440 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Vivi6g01440 1237 FunFam ABC transporter B family member 4 975 1233 - -
Vivi6g01440 1237 SUPERFAMILY ABC transporter transmembrane region 24 340 IPR036640 GO:0005524|GO:0016020
Vivi6g01440 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g01440 1237 FunFam Putative ABC transporter B family member 8 616 973 - -
Vivi6g01440 1237 Pfam ABC transporter transmembrane region 33 298 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g01440 1237 Pfam ABC transporter transmembrane region 669 933 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g01440 1237 Gene3D - 975 1236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01440 Vivi-Chr6 61839507 61843947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01440 21 1226 Calmodulin-binding Proteins AT2G36910 44.417 0.0 1048