Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01429 ATGGCTACCCAAGAAGCTTTGCTAGACAAGCCTCGAAAATCCATTCCCAAAACATTTTGGTTAATCCTCTCTTTAGTTGCTATTGTAAGCTCATCAGCCATTATTGTTTCTCAACTCAACAAACCCATCTCTTTCCTCCACCTCTCATCAGCTCCCAATATGTGTGAGCATGCTCTTGATACAGAATCATGTTTAACTCATGTATCAGAAGCAGTTCAAGGCCCAACCTTGGCTAACACAAAAGACCACAAGTTGAGCACACTCATATCCTTATTAACCAAGTCCACCACACACATTCAAGAAGCCATGAACAAAGCTAATGTTATAAAAAGCCGAGTTAACAGCGGCAGAGAGGAAAATGCTTTGAATGACTGTGAGCAACTAATGAACTTGTCCATGGAGAGAGTTTGGGACTCAGTGATGACTCTAACAAAAGATAACATGGACTCACAGCAAGACGCACACACATGGCTAAGTAGTGTGCTCACCAACCACGTAACTTGCTTGGATGGATTACAAGGAACAACTCGGGCGGTTATGGAAAGTGACATTCAGGACTTAATATCAAGAGCCAGGTCTTCTCTGGCCGTGCTTGTTTCCGTTTTACCTAAAACGAGTAACGACGAATTTGTTGACGAATCAATGAACGGTGAGTTTCCCACATGGGTAATGAATAAGGATAGAAGGCTTTTGGAGTCTTCAGGTGGGGACATAAAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGTAACTTCAAAACTGTGGCTGAGGCTGTGGCATCTGCACCAGACAAAGGTAAGACACGGTATGTTATCTATGTGAAAAGGGGAATCTACAAAGAGAAGGTAGAAATCGGTAAGAAAAAGACGAATGTGATGCTCGTTGGTGATGGTATGGATGCAACAATAATCACTGGCAGCTTGAATGCTATCGATATAAACAGCACCTTCAGATCTGCAACTGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGGATTCCAAAACACGGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTCCGTGTCGGTTCTGATCAATCTGTCATCAACCGCTGTCGCATTGACGCATTTCAAGACACTCTCTACGCACACTCCAACCGACAGTTTTACCGCGAATGCTTCATTACTGGTACTATTGATTTTATCTTTGGAAACGCAGCTGTCGTGATCCAGAAGAGCAAAATCGTGGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTGACAGCCCAAGGTCGAACAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAGTGTGACATAATACCAAGCACGGACCTCATACCTGTCCTAGACTCCATTAAGACTTACTTAGGCCGCCCGTGGAAAAACTACTCCAGGACTGTTGTGATGCAGTCCTTGATAGGCAACCACATCGACCCAACGGGATGGGCCGAATGGAATGAGACGACTAAGGGCTTTCTCAAAACATTGTATTATGGAGAGTACCAGAACAGTGGGCCCGGTGCTGGTACCGGCAAAAGAGTGAATTGGCCTGGCTATCATGTCCTAAATACTGCAGAGGCAACTATGTTTACAGTTGCAGAGATCATCCAAGGTAATGTTTGGCTGAAGAACAAAGGGGTGGCCTATATCGAAGGCCTGTAG 1662 0.4537 MATQEALLDKPRKSIPKTFWLILSLVAIVSSSAIIVSQLNKPISFLHLSSAPNMCEHALDTESCLTHVSEAVQGPTLANTKDHKLSTLISLLTKSTTHIQEAMNKANVIKSRVNSGREENALNDCEQLMNLSMERVWDSVMTLTKDNMDSQQDAHTWLSSVLTNHVTCLDGLQGTTRAVMESDIQDLISRARSSLAVLVSVLPKTSNDEFVDESMNGEFPTWVMNKDRRLLESSGGDIKANVVVAKDGSGNFKTVAEAVASAPDKGKTRYVIYVKRGIYKEKVEIGKKKTNVMLVGDGMDATIITGSLNAIDINSTFRSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGSDQSVINRCRIDAFQDTLYAHSNRQFYRECFITGTIDFIFGNAAVVIQKSKIVARKPMSNQKNMVTAQGRTDPNQNTATSIQQCDIIPSTDLIPVLDSIKTYLGRPWKNYSRTVVMQSLIGNHIDPTGWAEWNETTKGFLKTLYYGEYQNSGPGAGTGKRVNWPGYHVLNTAEATMFTVAEIIQGNVWLKNKGVAYIEGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01429 553 PANTHER PECTINESTERASE 29 543 - -
Vivi6g01429 553 CDD PMEI-like_4 57 201 - -
Vivi6g01429 553 FunFam Pectinesterase 236 553 - -
Vivi6g01429 553 SUPERFAMILY Pectin lyase-like 239 552 IPR011050 -
Vivi6g01429 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vivi6g01429 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 180 IPR035513 -
Vivi6g01429 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vivi6g01429 553 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vivi6g01429 553 NCBIfam pectinesterase inhibitor domain 23 179 IPR006501 GO:0004857
Vivi6g01429 553 Pfam Plant invertase/pectin methylesterase inhibitor 53 200 IPR006501 GO:0004857
Vivi6g01429 553 Gene3D - 235 553 IPR012334 -
Vivi6g01429 553 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Vivi6g01429 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01429 Vivi-Chr6 61257879 61259868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01429 3 553 Carbohydrate Esterase AT1G11580 53.451 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01429 K01051 - gmx:100815836 785.023