Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01425 ATGTCTCGCCCAATTGAGCCATTGAAAGAGATCAATGATTCAAAAGATTTGTGGAAGATCGCTGTTAGATGCAAACATCTATGGACTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTCCAAGCGTGATATGATTCAGGCTGTTGTCCCTGCTTATTTGCTTTCGAAATTCAAATCTGAAATTGAAATAGGAAACTCTTATATCATGCAAAATTTTAAAGTTGGGAAGAATGATTTTGCTTTTAAGTCGACAAATCATACATACAAATTGGTTTTTTGTGGGTCAACTTCTGTTAAGAAAGCAGAATTTCCTGACATCCCTCATAACTACCTTAACATAATTGGTTTGAATTCCATAGTTGAAGGAAGGTTTCAATCAAATGTTTTGGTTGATTTAATTGGAGGAATCATTGATATCACTCAAACCCAAGTTAACGGTGACAACAGCAAGAACAGAATAGTTTTTTCAATTGTAGATGCCAGCAAAACAGTTGTACAATGTACTCTTTGGGGGCAACTTGCAATTCAGCTATATGAGTATTATAAGAATAATAAGCAAGCCTCTGATATTGTCATTGTGCTAATCAATGCAAGGGTTAAAGAGGCTCAAGGAGGATTTCCCGTTAGTGTTTCCAACACATGGAATGGAACGAAACTGTTGATTAATGACCTTGCTATTGAGGAAGTCAAGAGTCTAAAAGAAAGACATGGTGTTGATTTGCCTTTGTTATCATCTTCAAGTGTACAAGTTGAGGCAACGCAAAACTCATTTTATTCTGACTATGACAAATTTGAAACAACCTGTGTTACCGTTGCTACCCTCGATAAGTTTGATGCTGGGCAGATGGGATGGTACTATGATGGATGTGTGGAATGCACAAGGAGTGTGACTGCCAAGGATGGAAAGCTGAAGTGTTTTCAGGATCATATTAGCCCAGAACCTGTGCCACGGTATAAGCTTGATATAACAGCTGTTGACGGCAGTTCGAAGGCAAAGTTCGTCTTTTGGGACACAGACTGCTCTGTTGATTACGATCCACTTGAGTTCCCTTACGAACTTGACTCCATATTGGAAAAAGAATTGGCAATTAGAGCTGTTTATCAGCCTAAAAATGGGAGACTTTCTGTCATTGGCTTCAAGACTGATGAAGATGTGCGTAATAAAATTAATGAGAGTTTCAAATTTGAAGAGGAACCTGTATCTGCGTCTGCAAAAAATGACTTGACCATTGAAAATTCAGGACTCACTCCATGTAAGAGACTTATGAATGATGCAGTAGAAGATAATGATAGTGTACAGCAATCATCAACCAAGATGGCCAAAGATATTAAACAGGAGAAATAG 1362 0.3789 MSRPIEPLKEINDSKDLWKIAVRCKHLWTVTSSSNKEHMEMVLVDSKRDMIQAVVPAYLLSKFKSEIEIGNSYIMQNFKVGKNDFAFKSTNHTYKLVFCGSTSVKKAEFPDIPHNYLNIIGLNSIVEGRFQSNVLVDLIGGIIDITQTQVNGDNSKNRIVFSIVDASKTVVQCTLWGQLAIQLYEYYKNNKQASDIVIVLINARVKEAQGGFPVSVSNTWNGTKLLINDLAIEEVKSLKERHGVDLPLLSSSSVQVEATQNSFYSDYDKFETTCVTVATLDKFDAGQMGWYYDGCVECTRSVTAKDGKLKCFQDHISPEPVPRYKLDITAVDGSSKAKFVFWDTDCSVDYDPLEFPYELDSILEKELAIRAVYQPKNGRLSVIGFKTDEDVRNKINESFKFEEEPVSASAKNDLTIENSGLTPCKRLMNDAVEDNDSVQQSSTKMAKDIKQEK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01425 453 MobiDBLite consensus disorder prediction 430 453 - -
Vivi6g01425 453 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Vivi6g01425 453 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Vivi6g01425 453 Gene3D - 250 386 IPR012340 -
Vivi6g01425 453 Gene3D - 2 107 IPR012340 -
Vivi6g01425 453 Gene3D - 110 244 IPR012340 -
Vivi6g01425 453 SUPERFAMILY Nucleic acid-binding proteins 118 249 IPR012340 -
Vivi6g01425 453 CDD RPA1_DBD_B_like 137 241 - -
Vivi6g01425 453 CDD RPA1_DBD_A_like 19 104 - -
Vivi6g01425 453 PANTHER OS03G0429900 PROTEIN 10 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi6g01425 453 SUPERFAMILY Nucleic acid-binding proteins 272 371 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01425 Vivi-Chr6 61114905 61117265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01425 1 180 Core DNA Replication Machinery Family AT5G08020 22.798 2.46e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01425 - - vvo:131658312 731.865