Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01402 ATGTTGGTTAGAAGAGGAAAAACCAATGAGAAATTGAGAGGCTTGAAGAACATTGTTCCAGAATGTTACAAGACCATGGAAATGGAAGTAATGTTGAATGGAATCATAAACTATGTTCGGTCATTGGAGCATCAAGTAGTGTTTCTTTCATTGAAGCTTACTGCAGCTAGTACTTATTATGATTTCAATTCAGAAGCAGATGATTTAGAAACAATGCAGCAGAATAGATACTACTTTGGCCGAATGACGCATGTAATGAGGATGAAGTAG 270 0.363 MLVRRGKTNEKLRGLKNIVPECYKTMEMEVMLNGIINYVRSLEHQVVFLSLKLTAASTYYDFNSEADDLETMQQNRYYFGRMTHVMRMK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01402 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 61 IPR036638 GO:0046983
Vivi6g01402 89 Gene3D - 3 47 IPR036638 GO:0046983
Vivi6g01402 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 42 IPR011598 GO:0046983
Vivi6g01402 89 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 66 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01402 Vivi-Chr6 59129405 59132149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01402 3 73 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 69.014 1.38e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01402 - - vvo:131609187 181.415