Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01392 ATGGCTAGTGAATTATCTCAGTTGAAAAAACCAATTCATTTTTTCAAGATCATAGTTACTCAAAGTCTTCATCAAGAAAAGCTTATGATACCAAGAAAGTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGTATAAAGACTCCCAATGGTGCAGACTGGAAAATTAGTATAGTAAAAAATGATGGAAACAAATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTATCTCATGGCCATCTTCTTGTTTTCAAATATGAAACAACTTCCCATTTTGAGGTAAGAATCTTTGACAAGAGTGCCTTAGAGATAAACTATCCTTTCAAAAGAGTTGAAGTCAATAATGAAGAAGATTGTAGAGCAACTCAAAAGAGAAAATCTTACTCCTCCTTTGAAATTGGAAGTACTAGTTGTGTTAAAGTTGTGAAATCACAAAAGGTAGCAGCTGCATGTCATACTCACAAAAAGTATCCTTTCAAAAGAGCTGAAGTCAACAATGATGAAGATTGTAGAGTAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGAAATTGGAACCACTAGTTGTGTTAAAAAAGACAAAGGGAATACAGCACTTGAAAGAGCAGAAGAGTTCAAAACATGCAATCCATCATTTGTTGTTGTCATGGGTGCATCTTATGTTGGAGGCCGTTTTCTTTTGGCACACTTTGATATGGACAAGGAGAAAGGATATATTTATTTCCAGGTGTTGGATCATGGATTAGTTTGGCCTGCAAAGTACTCAACCTGCAGAAGGTGCAATGGAAGAATAATGTTTGAAGTTACAAGTGGGTGGAAGGAATTCTCAATGGACAATAGTTTGAAAGTTGGTGATGTTTGCAAATTTGAACTCATTCTTAGAACTAATATGACCTTTCATGTTCACATTTTTAGAAACACAAATGAAGTCAACGCAGATTGTTCAACAACATCTGCAAATGGGATTATTGTCCTATGA 996 0.3484 MASELSQLKKPIHFFKIIVTQSLHQEKLMIPRKFVKKYGEYLPKAICIKTPNGADWKISIVKNDGNKWFEKGWKEFAEYHSLSHGHLLVFKYETTSHFEVRIFDKSALEINYPFKRVEVNNEEDCRATQKRKSYSSFEIGSTSCVKVVKSQKVAAACHTHKKYPFKRAEVNNDEDCRVSQKRKAYSSFEIGTTSCVKKDKGNTALERAEEFKTCNPSFVVVMGASYVGGRFLLAHFDMDKEKGYIYFQVLDHGLVWPAKYSTCRRCNGRIMFEVTSGWKEFSMDNSLKVGDVCKFELILRTNMTFHVHIFRNTNEVNADCSTTSANGIIVL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01392 331 SUPERFAMILY DNA-binding pseudobarrel domain 211 312 IPR015300 -
Vivi6g01392 331 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Vivi6g01392 331 ProSiteProfiles B3 DNA-binding domain profile. 252 313 IPR003340 GO:0003677
Vivi6g01392 331 PANTHER B3 DOMAIN-CONTAINING 9 307 - -
Vivi6g01392 331 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vivi6g01392 331 Gene3D - 6 107 IPR015300 -
Vivi6g01392 331 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Vivi6g01392 331 Pfam B3 DNA binding domain 225 312 IPR003340 GO:0003677
Vivi6g01392 331 Gene3D - 195 315 IPR015300 -
Vivi6g01392 331 CDD B3_DNA 13 104 IPR003340 GO:0003677
Vivi6g01392 331 SMART B3_2 14 106 IPR003340 GO:0003677
Vivi6g01392 331 SMART B3_2 218 313 IPR003340 GO:0003677
Vivi6g01392 331 CDD B3_DNA 216 311 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01392 Vivi-Chr6 58031916 58033417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01392 14 329 B3 DNA Binding Superfamily AT3G18990 29.805 6.56e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01392 B3 9.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01392 - - vvo:131611564 664.84