Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01391 ATGGCTAGTGAATTATCTCAGTTGAAAAAACCAATTCATTTTTTCAAGATCATAGTTACTCAAAGTCTTCATCAAGAAAAGCTTATGATACCAAGAAAGTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGTATAAAGACTCCCAATGGTGCAGACTGGAAAATTAGTATAGTAAAAAATGATGGAAACAAATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTATCTCATGGCCATCTTCTTGTTTTCAAATATGAAACAACTTCCCATTTTGAGGTAAGAATCTTTGACAAGAGTGCCTTAGAGATAAACTATCCTTTCAAAAGAGTTGAAGTCAATAATGAAGAAGATTGTAGAGCAACTCAAAAGAGAAAATCTTACTCCTCCTTTGAAATTGGAAGTACTAGTTGTGTTAAAGTTGTGAAATCACAAAAGGTAGCAGCTGCATGTCATACTCACAAAAAGTATCCTTTCAAAAGAGCTGAAGTCAACAATGATGAAGATTGTAGAGTAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGAAATTGGAACCACTAGTTGTGTTAAAAAAGACAAAGGGAATACAGCACTTGAAAGAGCAGAAGAGTTCAAAACATGCAATCCATCATTTGTTGTTGTCATGGGTGCATCTTATGTTGGAGGCCGTTTTCTTTTGTCTATACCTTCCATGTTTGGCAAGGCACACTTTGATATGGACAAGGAGAAAGGATATATTTATTTCCAGGTGTTGGATCATGGATTAGTTTGGCCTGCAAAGTACTCAACCTGCAGAAGGTGCAATGGAAGAATAATGTTTGAAGTTACAAGTGGGTGGAAGGAATTCTCAATGGACAATAGTTTGAAAGTTGGTGATGTTTGCAAATTTGAACTCATTCTTAGAACTAATATGACCTTTCATGTTCACATTTTTAGAAACACAAATGAAGTCAACGCAGATTGTTCAACAACATCTGCAAATGGGATTATTGTCCTATGA 1020 0.35 MASELSQLKKPIHFFKIIVTQSLHQEKLMIPRKFVKKYGEYLPKAICIKTPNGADWKISIVKNDGNKWFEKGWKEFAEYHSLSHGHLLVFKYETTSHFEVRIFDKSALEINYPFKRVEVNNEEDCRATQKRKSYSSFEIGSTSCVKVVKSQKVAAACHTHKKYPFKRAEVNNDEDCRVSQKRKAYSSFEIGTTSCVKKDKGNTALERAEEFKTCNPSFVVVMGASYVGGRFLLSIPSMFGKAHFDMDKEKGYIYFQVLDHGLVWPAKYSTCRRCNGRIMFEVTSGWKEFSMDNSLKVGDVCKFELILRTNMTFHVHIFRNTNEVNADCSTTSANGIIVL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01391 339 ProSiteProfiles B3 DNA-binding domain profile. 218 321 IPR003340 GO:0003677
Vivi6g01391 339 CDD B3_DNA 216 319 IPR003340 GO:0003677
Vivi6g01391 339 Gene3D - 195 323 IPR015300 -
Vivi6g01391 339 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vivi6g01391 339 SMART B3_2 14 106 IPR003340 GO:0003677
Vivi6g01391 339 SMART B3_2 218 321 IPR003340 GO:0003677
Vivi6g01391 339 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Vivi6g01391 339 SUPERFAMILY DNA-binding pseudobarrel domain 211 320 IPR015300 -
Vivi6g01391 339 Pfam B3 DNA binding domain 218 320 IPR003340 GO:0003677
Vivi6g01391 339 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Vivi6g01391 339 CDD B3_DNA 13 104 IPR003340 GO:0003677
Vivi6g01391 339 PANTHER B3 DOMAIN-CONTAINING 9 315 - -
Vivi6g01391 339 Gene3D - 6 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01391 Vivi-Chr6 58031916 58033417 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01391 14 337 B3 DNA Binding Superfamily AT3G18990 29.917 4.73e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01391 B3 5.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01391 - - vvo:131611564 687.952