Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01387 ATGGCTACTGAATATCCTAAGGCGAACAAGCCAATCCAGTTTTTCAGGGTCATAGTTACTGAAAATCCTTCACATGGAAAGCTTGTAAAACCTTGTATGTTACGAATAAAGTTTGTGAAGAAATATGGACAAGGTTTAGCAAAAGTTATTTGTCTAAAGACTTCCAATGGGGAAAATTGGAAAATAAATTTGGTGATCAATCATGGCAAAATATGGTTTGGAAAAGGTTGGAAGGAATTTGCACAGTATTATTTTCTAGGTCATGGCCATTTTCTGGTTTTTAAATATCAAAGACATTCTAAATTTCATGTAGACATCTTTGATAATAAGTCTACGCTAGAGATAGATTACCCTCCCATAAGAGTTGAAGCGGAAAAGGTTTCTGAAAATAATGAAGATTTTAGAACAAGTAAGAAGCGAAAAGCAAACTCTTCCTTTGAATTTGGAAGCACTGGTTGTGCCAAGCATCATACTCACAAAAGGAGCAAAGAGTCTTCTCAACAAAATGATGAAGCTACTCAAGGATAA 528 0.3485 MATEYPKANKPIQFFRVIVTENPSHGKLVKPCMLRIKFVKKYGQGLAKVICLKTSNGENWKINLVINHGKIWFGKGWKEFAQYYFLGHGHFLVFKYQRHSKFHVDIFDNKSTLEIDYPPIRVEAEKVSENNEDFRTSKKRKANSSFEFGSTGCAKHHTHKRSKESSQQNDEATQG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01387 175 MobiDBLite consensus disorder prediction 128 142 - -
Vivi6g01387 175 ProSiteProfiles B3 DNA-binding domain profile. 50 110 IPR003340 GO:0003677
Vivi6g01387 175 MobiDBLite consensus disorder prediction 128 175 - -
Vivi6g01387 175 Pfam B3 DNA binding domain 33 109 IPR003340 GO:0003677
Vivi6g01387 175 SUPERFAMILY DNA-binding pseudobarrel domain 21 109 IPR015300 -
Vivi6g01387 175 PANTHER B3 DOMAIN-CONTAINING 9 165 - -
Vivi6g01387 175 CDD B3_DNA 14 108 IPR003340 GO:0003677
Vivi6g01387 175 SMART B3_2 14 110 IPR003340 GO:0003677
Vivi6g01387 175 Gene3D - 7 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01387 Vivi-Chr6 57837846 57839377 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01387 13 133 B3 DNA Binding Superfamily AT4G01580 36.585 1.12e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g01387 B3 1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01387 - - vvo:131609182 370.163