Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01357 ATGCAACTTCATAACCTTTGCATTGTTCTACCACAAAATTCAGGTGAAATTATGAAACAACAACATGAAAATGGTTTCCAACAACAACAACAACCTAAGGCTAAAAACCCTTCAAGTGCTTGTGGTGGTGGAGGACAACAAGTTCTTGATTTGCTTCATGATTCATTGAGCAAGCTATGTAGTGGAAGATGGTGGGGAGGTGCAAGAAGAATTTGCAGACATAGGGGGGTGCGAAAAGCAAAAAAGAAAAACTCTTCAAGAGGTTCTAGTGCTACCATGTTTCATGACATGGATGGTGTTCAATTTGCTGTTAAGATTGGAAGAGACAATCCAAGGATTTTCAGCTATGCAGAACTTTTCATAGGCTCCAATGGTTTCAATGAAGAACAGGTTCTAGGAAGTGGAGGCTTTGGAAAAGTGTACAAAGCACTTTTGCCAAGTGATGGAACATTGGTTGCTGTGAAATGCTGTTTATCAGAGAAAGGTAAGCAGTTTGACAAGAGTTTCTTAGCCGAGTTATCGGCTGTAGCCGATCTTCGTCACAAGAATCTCGTCCGGTTGAGAGGCTGGTGTGTTCATGAAGATCGGCTTCATCTTGTTTATGACTACATGCCTAATCGAAGCCTTGATCGCGTGCTTTTTCGACGGAAGGAGAATACGAAAGGTGAGATTCTTGGTTGGGGACAAAGGTGTAGAATTGTGAAAGGCTTGGCTGCTGCATTGTACTATCTGCATGAACAGTTAGAGACTCAAATCATTCATAGAGATGTTAAGACTAGTAATGTTATGCTTGATTCGCATTACAATGCTAAGTTAGGCGATTTCGGTATGGCGCGGTGGTTGGAACATGAACTTGAGTATGAGTTTAAGTACAATTACAACAGCAGCAGCAACAGCAGCAATAAGAAAACTTCGAGTAGAATCGATCATTTCAGATTGGGGGAAACATCGAAAATCGGTGGAACAATTGGTTATCTTCCACCAGAAAGCTTGCAGAAACCGAGCAACGGTACATCGAAATGTGACGTTTTCAGCTTTGGGATTGTTGTTCTTGAAATTGTGTCTGGTAGAAGAGCAATAGATCTTGCATACTCTGATGAGAAAATCATTCTGCTTGATTGGATTCGAAGGCTTAGCGACGAAGGGAAGCTTGTAGAAGCAGCTGATACAAGGCTACAAAAAGATGGATCATCATTCAATTTTTCTGAGATGAAGCATTTCATTCATATAGGTCTACTTTGCACACTTCATGATCCGAATTTGAGGCCTAATATGAAATGGGTTGTGGAAGCACTTTCTGATTTAAGTTTCAAACTTCCTTCACTTCCTTCTTTTCTGTCACACCCTCTTTACATCTCTTTGTCTTCACCTTCTGAGACTACTAGTCCTAGTAGCACGAGCGGCACGATCTCGGCCTCGGCCACGGATAACGTTAGCTTAGTCACAAATTATAATAGTTCAACAAACTATTTCACAGCTGCAGGTGAAACAGTTTATGTGACAGCAGAAAATAAAAACAGCGGAATCATTTCTTCGAAGAGCGTGAATCGGAGTCATCACAGGCCGAACTTTCCGGTGGTTGAAACTCCCAGAGAAATCTCATACAAAGAGATTGTTTGTGCTACAAGTAACTTCTCAGAGTCAAGAAGAGTAGCTGAACTAGACTTTGGAACTGCTTATCATGGAATCCTCGACGACGATTGTCATGTTTTGGTGAAAAGGTTGGGAATGAAGACGTGTCCTGCGCTGCGCGTTCGGTTCTCGGACGAGCTCAGGAATCTAGGAAAGCTTAGGCATCGGAATTTGGTTCAGCTTCGCGGATGGTGTACCGAACAAGGGGAGATGCTCGTGGTTTATGATTACTCAGCTAGTAGAATTCTCAGTCAACAACTTCTCCAAATTCATAACAAAGGTGAGAACAGTTCGGTACTCGAATGGAATCATAGGTACAACATAGTTAAATCGCTTGCATCTGCTGTTCATTACCTACACGAAGAATGGGACGAGCAAGTGATTCACCGAAACATTACCTCTTCTGCTGTGATTCTCGAACAAGATATGAATCCAAGACTAAGCAGTTTCGCTCTAGCCGAATTCCTATCAAGGAACGAGCATGGAGACCATCATGTAGTCAGCGACAGTAGCAAATCTGTTCGAGGGATCTTCGGTTACATGTCGCCAGAATACATGGAATCGGGCGAAGCAACCACGGCTGCGGATGTTTATAGTTTCGGCGTGGTGGTACTTGAGGTTGTAAGTGGACAAATGGCAGTGGATTTTAGGTACAAAGATGTTCTTTTGGTGAAGAAAGTTCATGAGTTTGTGATGAAGAAAAGACCATTGAAAGAACTAGCTGATGTAAGACTCAATGGAGAGTATATTGAGAAAGAGTTGATGAGGTTGGTGAGATTAGGAATTGTGTGCACTAGTTGTGATGCTGAATTGAGACCAAGCATGAGACAGATTGTGAGCATTCTTGATGGAAATGATAAATTGCTGAACATGGAAAAGAAGGAAAGTAGGGAAGATTGGAGAGAAAGAAATGGTAGTTCTTTGTCAATGGTTAGGAGGATTCAAGCTCTAGGTATACAGTAA 2595 0.4197 MQLHNLCIVLPQNSGEIMKQQHENGFQQQQQPKAKNPSSACGGGGQQVLDLLHDSLSKLCSGRWWGGARRICRHRGVRKAKKKNSSRGSSATMFHDMDGVQFAVKIGRDNPRIFSYAELFIGSNGFNEEQVLGSGGFGKVYKALLPSDGTLVAVKCCLSEKGKQFDKSFLAELSAVADLRHKNLVRLRGWCVHEDRLHLVYDYMPNRSLDRVLFRRKENTKGEILGWGQRCRIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNAKLGDFGMARWLEHELEYEFKYNYNSSSNSSNKKTSSRIDHFRLGETSKIGGTIGYLPPESLQKPSNGTSKCDVFSFGIVVLEIVSGRRAIDLAYSDEKIILLDWIRRLSDEGKLVEAADTRLQKDGSSFNFSEMKHFIHIGLLCTLHDPNLRPNMKWVVEALSDLSFKLPSLPSFLSHPLYISLSSPSETTSPSSTSGTISASATDNVSLVTNYNSSTNYFTAAGETVYVTAENKNSGIISSKSVNRSHHRPNFPVVETPREISYKEIVCATSNFSESRRVAELDFGTAYHGILDDDCHVLVKRLGMKTCPALRVRFSDELRNLGKLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLLQIHNKGENSSVLEWNHRYNIVKSLASAVHYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGDHHVVSDSSKSVRGIFGYMSPEYMESGEATTAADVYSFGVVVLEVVSGQMAVDFRYKDVLLVKKVHEFVMKKRPLKELADVRLNGEYIEKELMRLVRLGIVCTSCDAELRPSMRQIVSILDGNDKLLNMEKKESREDWRERNGSSLSMVRRIQALGIQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01357 864 MobiDBLite consensus disorder prediction 21 42 - -
Vivi6g01357 864 FunFam Receptor like protein kinase S.2 623 849 - -
Vivi6g01357 864 SMART serkin_6 126 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01357 864 Gene3D Transferase(Phosphotransferase) domain 1 628 852 - -
Vivi6g01357 864 Pfam Protein kinase domain 126 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01357 864 Gene3D Phosphorylase Kinase; domain 1 506 621 - -
Vivi6g01357 864 FunFam Receptor like protein kinase S.2 504 621 - -
Vivi6g01357 864 SUPERFAMILY Protein kinase-like (PK-like) 111 472 IPR011009 -
Vivi6g01357 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Vivi6g01357 864 Pfam Protein tyrosine and serine/threonine kinase 550 826 IPR001245 GO:0004672|GO:0006468
Vivi6g01357 864 PANTHER - 87 433 - -
Vivi6g01357 864 SUPERFAMILY Protein kinase-like (PK-like) 521 826 IPR011009 -
Vivi6g01357 864 FunFam Receptor like protein kinase S.2 204 438 - -
Vivi6g01357 864 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Vivi6g01357 864 Gene3D Transferase(Phosphotransferase) domain 1 204 438 - -
Vivi6g01357 864 Gene3D Phosphorylase Kinase; domain 1 99 203 - -
Vivi6g01357 864 ProSiteProfiles Protein kinase domain profile. 126 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01357 864 ProSiteProfiles Protein kinase domain profile. 545 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01357 Vivi-Chr6 56667518 56670587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01357 530 834 Receptor kinase-like Gene Family AT3G59740 32.792 6.93e-46 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vivi6g01357 PK_Tyr_Ser-Thr 1.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01357 - - gmx:100796108 1244.57