Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01355 ATGGAGACGGCACCTAAACTCAAAGAAGATCAAAGACTCGATCTTGGAGACAACAAGCACAAAGGAAAATGGACTGAAGATGAGGATTGGCTTCTTGGAGAATTTGTGGATTTGTTTGGACTTCAAAATTGGTTCTACATTGCAACGTTGATTGAAGGAAAGACAAACAAACAATGCTGGAATCGATGGCATAACCATGTTCGGCCAGATATAGAGAAGGGGCCATGGAGCAAAGAGGAAGACATGACACTGATTAAAGCTCATAAAGAAGTTGGAAACAAGTGGACAGAAATTGCAAAGAGATTGCCGCGTCGTACCGAGAACACGGTCAGGAATCATTGGAATAATACTAAGAAGCGTCTATATTCCAAGAAGGCTCAAAATGAAAGAAAGGAAGATTTAAATGAAGATTTGCTTCTGAATTATATCAAGGGAATCATTCTTGTTCAAGAAAGTGAAAATGAAAGCAATGTGGAAAACGACATTGGTGTTGATTGTGTTATGAACAAAAGCTCAGAGAGTGACTTCAACTTTAAAGGTTGGGATAGTCAAGAAGAGGATGAAGTTGGCAGCTATGTCTTATGGGATAGTCAAGAATTATGA 603 0.3897 METAPKLKEDQRLDLGDNKHKGKWTEDEDWLLGEFVDLFGLQNWFYIATLIEGKTNKQCWNRWHNHVRPDIEKGPWSKEEDMTLIKAHKEVGNKWTEIAKRLPRRTENTVRNHWNNTKKRLYSKKAQNERKEDLNEDLLLNYIKGIILVQESENESNVENDIGVDCVMNKSSESDFNFKGWDSQEEDEVGSYVLWDSQEL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01355 200 Gene3D - 16 72 - -
Vivi6g01355 200 CDD SANT 75 118 IPR001005 -
Vivi6g01355 200 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vivi6g01355 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vivi6g01355 200 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Vivi6g01355 200 Pfam Myb-like DNA-binding domain 21 66 IPR001005 -
Vivi6g01355 200 Gene3D - 75 138 - -
Vivi6g01355 200 PANTHER MYB PROTEIN-RELATED 21 137 - -
Vivi6g01355 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 67 IPR017930 -
Vivi6g01355 200 SMART sant 72 120 IPR001005 -
Vivi6g01355 200 SMART sant 20 69 IPR001005 -
Vivi6g01355 200 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Vivi6g01355 200 CDD SANT 23 67 IPR001005 -
Vivi6g01355 200 ProSiteProfiles Myb-like domain profile. 16 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01355 Vivi-Chr6 56595670 56596382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01355 21 146 MYB Transcription Factor Family AT4G18770 53.175 8.39e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g01355 Myb_DNA-binding 2.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01355 K09422 - qsu:111999145 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01355 6 56595670 56596382 Vivi6g01355 6 56595670 56596382 ECH