Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01353 ATGTCACATGAATGTTTAACATGCGACAAAAAATTCCAGATTTCATGTCAAGCGACATGTTATCACTGGATCTGTGGAACATGTATGATGTATATTTGGATGTGGCGAGATTTTGAGCGCTGCAAATGTCCAATTTGTGATAAACCCGTCGATTTTTTGATTCCAACGTTAAAGAACAAATCTCGTCAAAACCCTCAAGTTTTGGCTAAAATACATGCTTACAACCATATGTTTGGTCCTATATCTAACTTTCCATTTTTCTTTCTTTATCATGTGCTTTTTAGGGATCTTCTTACCAATAATGTATCCTCTACTATTCTTTTGAATGCTGGATTCTTCATTAGTTTTACAATGAATCTTGCGTACATGTTAAGCCCTTTAAGAGAGAAATTTGGAATAATAATAGTTTATCTATTATGGCTAATCTGGTTATCACGTACTGCTTCTGTCTATAAATCGGAACTTTGCATCCGTCACGGTGGTAATTTTAGAGGGTGGAAAATTATAACATGA 513 0.345 MSHECLTCDKKFQISCQATCYHWICGTCMMYIWMWRDFERCKCPICDKPVDFLIPTLKNKSRQNPQVLAKIHAYNHMFGPISNFPFFFLYHVLFRDLLTNNVSSTILLNAGFFISFTMNLAYMLSPLREKFGIIIVYLLWLIWLSRTASVYKSELCIRHGGNFRGWKIIT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01353 170 PANTHER UNCHARACTERIZED 3 128 IPR038896 GO:0061630
Vivi6g01353 170 ProSiteProfiles Zinc finger RING-type profile. 5 47 IPR001841 -
Vivi6g01353 170 SUPERFAMILY RING/U-box 3 55 - -
Vivi6g01353 170 ProSitePatterns Zinc finger RING-type signature. 20 29 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01353 Vivi-Chr6 56574510 56575621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01353 5 84 C3H Transcription Factor Family AT4G33940 34.118 7.74e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01353 K15707 - psat:127129309 198.364