Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01349 ATGAACAATTTTCACAAATTCCCTCTTCTACTAATTCTATTCTTTCTCACATTACAAAAACCAGTAACATCAAAAACCGAATGCACTCGTAAATGCGGCAATCTCCACATTCAATTCCCATTCCATCTCGAAAACAACACCAACCACACCAACCACTCCCCTCAAACCTTCCAATTATCATGCACAGATCAACATCAAACAGTGTTAGAATTTCCCACAATTCCAGTCACGCTTTTCATCAAACACATAGACTACAAAACACAAAAACTCCAAATCTACGACCCAAATAACTGTCTTTCAAGTCAGTTATTCAAACTTAGAAACTCAACCGTTTCGCCTTTCCAGTTTCACTTTCATGAGTTTAATATACAGCGCAACGTTTCGTTCTTTCGTTGTGATTCGAGAAATGGATGTTTGATTAAGCAACGTGATTTTGGTGCGGATTTTGTTGATCCTGAATTGGTTTCTTGTAGAAAAGTGAGTGATGTATTGAATGTGGGTTGGATGATTGAGGAATGGGAGGATGATGATGTTACAGAGAGTTTGATTTTGGAGTGGTCTAAACCTAATTGTAGTTTTTGTGAAGTTCAAGGGAAGAAATGTAGATGGAAGAATGGTAGTAGAAGTGGTGAAGTTGAATGTTTTGTTTGTCCATCAAATGAGATTGCTAGATCTACTGTTCTTCTAATTACTGCTGGGGTTATAGTTGGTTCCATGATTTTGCTGCTATTGGCAAAAGGATTGCTTCATATATATCGCTATTTTAAGATGAAAGGGGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGAGCAATGAAACCTACAAGATTCACTTATGCTGATATTAAGAGAATTACAAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCTCATGGAGCAGTGTTTAAAGGCATGCTCTCCCAAGAAATTTTGGTTGCTGTGAAGGTACTCAATGAAACACAAGGAGATGGAAAAGATTTCATTAATGAAGTTGGAACCATGGGAAAAATTCATCATATCAATGTTGTTCGCTTGCTTGGATTTTGTGCCGACGGGTTCCACCGTGCGCTTGTCTATGATTTCTTTCCAAATGGGTCGTTGCAAAATTTCTTGGCGCCGCCGGAGAACAAGGATGTTTTTCTTGGTTGGGAAAAGTTGCAACAAATTGCTCTTGGTGTTGCAAGAGGGATTGAGTATCTTCATATTGGTTGTGATCAGAGAATACTTCACTTTGATATCAATCCACACAATGTATTAATAGATGATAATCTGAGTCCCAAAATTACGGATTTTGGGCTTGCGAAATTGTATCCGAAAAATCAAAGCACCGTGTCTATGACCGCGGCTAGAGGAACTTTGGGCTACATTGCACCTGAAGTTTTCTCAAGAAACTTTGGAAACGTGTCTTATAAGTCTGACATTTATAGCTATGGAATGTTGTTGCTGGAGATGGTTGGTGGAAGAAAGAATACTAACGTGTCAGCAGAGGAAACATTCCAAGTTTTGTATCCGGAATGGATCCATAATCTGGTTGAAGGGAAAGATGTGCAAGTTAATATCGAGGATAAGGTAGATGTTAGAATTGCAAAGAAACTTGCGCTTGTGGGACTTTGGTGTATTCAGTGGAATCCAGTGGATCGTCCGGCTATGAAAACTGTGGTACAAATGCTTGAAGGGAAAGGAGAAAAATTAACGGCACCCCCTACTCCTTTTGACTCTATTGATGTTAAAAGAACAAACGAGGTTATTCCAACCCGACATCTGAGTTTTGAGTTAGAAGTTATTCCTGAAACAGAGTAA 1809 0.3875 MNNFHKFPLLLILFFLTLQKPVTSKTECTRKCGNLHIQFPFHLENNTNHTNHSPQTFQLSCTDQHQTVLEFPTIPVTLFIKHIDYKTQKLQIYDPNNCLSSQLFKLRNSTVSPFQFHFHEFNIQRNVSFFRCDSRNGCLIKQRDFGADFVDPELVSCRKVSDVLNVGWMIEEWEDDDVTESLILEWSKPNCSFCEVQGKKCRWKNGSRSGEVECFVCPSNEIARSTVLLITAGVIVGSMILLLLAKGLLHIYRYFKMKGDDIARIEKFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGKDFINEVGTMGKIHHINVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPENKDVFLGWEKLQQIALGVARGIEYLHIGCDQRILHFDINPHNVLIDDNLSPKITDFGLAKLYPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSAEETFQVLYPEWIHNLVEGKDVQVNIEDKVDVRIAKKLALVGLWCIQWNPVDRPAMKTVVQMLEGKGEKLTAPPTPFDSIDVKRTNEVIPTRHLSFELEVIPETE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01349 602 ProSiteProfiles Protein kinase domain profile. 290 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01349 602 SUPERFAMILY Protein kinase-like (PK-like) 272 561 IPR011009 -
Vivi6g01349 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 264 578 IPR045874 GO:0004672
Vivi6g01349 602 Pfam Wall-associated receptor kinase galacturonan-binding 28 94 IPR025287 GO:0030247
Vivi6g01349 602 SMART serkin_6 290 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01349 602 FunFam PR5-like receptor kinase 365 571 - -
Vivi6g01349 602 Gene3D Phosphorylase Kinase; domain 1 265 364 - -
Vivi6g01349 602 FunFam serine/threonine-protein kinase PBS1-like 261 364 - -
Vivi6g01349 602 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Vivi6g01349 602 Gene3D Transferase(Phosphotransferase) domain 1 365 570 - -
Vivi6g01349 602 Pfam Protein kinase domain 293 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01349 Vivi-Chr6 56364564 56368260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01349 256 573 Receptor kinase-like Gene Family AT1G66910 49.538 5.82e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi6g01349 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01349 - - gmx:100819302 861.292