Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01346 ATGGATGGTGCTTCCAGTATTACTCAAAGTAAGAATGTTTCACTGTTCGGTAGTGTTCCATTTCATGGCTCATGTTCGTTGAAAACTAAGCGTAGAAGAAGTGACATGTGTTTGAGCTCTAAAAAAAGCAAGTCAGATGAAGAGTCTCTTGTGTGGCATAAACAAGTTAATTTTATTCGCATTGACAGTGATGAAGAACGAGATCAAGAGTGGTCGAAATTTTCTAAGGGTTATGATGATGATGTTATTTGGATTGACACTGACGAAGAAGGAGATCAAGAGGAGTTGAAATTTTCTAAGGCTTGTGTTGAACAAGTAGAAAATGTTGTTGGTGATGCTGATGATGTTATTTGCCTTGACAGTGACGAGGAAGGAGATAAAGAGGAGTTGAACTTTTCTGATAAGAAATTTTCTAAGGCTTGTGTTGAACAAGTAGAAATTGTTGATAATGCTGATGCTGATAAGGTTGGAGATGAGGAATGGTTGGGATATCCTAACAAGAACAAATTTGAGGTTGACGGCATTAATATCCAAAATGAGGAACAAAGTGGAGATATTGTTGGTGAAGGAGGGTTGGAAGAATATTATAATGATGATGAAGAAGATGAATTTGATGATGGTGAAGAAAGTGAGGAAATTGAGACTAGTGATGAAGAATTTCTAGTTGATAATGTGAATGATGTTTTTGAAAGTGATGATAGCCGTGGTGGTGGTGGTGGTGGTGATGATGATGTACAATCTGTTCGAGGTTTACGTGTTGGGGTTGAAAGTGATTCTATTAAACCAAAACAGAAGAAGATGATTGAGAGGAAGGAAAGTGATTATAAAGGTAGAGCTAGCAGCAGTAGTGGCGAGAAGAAGGAATCCATGGAGTTGCGTTTGAATCAAAGGGGAAAAAGCACAGTTTTTTTGCCGAAGGAGTTGCGTTTAATCGAACTCCTTGCTGGATACTATTGGGGAAACAAGAATAGTAGAATTCAGAATGATTCACCTGTGTTGGAGATGAAAGATGTTATTCGGCGTGATACAAGATCACCACCTGTTTGTACTGAGACAGCTCCATTGATATGGAGCCTTAAAAAGGCGGAGAAGGTGCAAAAGACCAAGAGCGAGAAGGAGGAGGAAGTACTATGGGATAAAATGGAAACAAGCCTTAGAGAACTTGAAGCTGAATCCATGATGGGAAATTTAGGGACCAATAAAGCTGTGAAGGAAAAGATGGAAAGTTCATCCTCTGAATGTGATCATGACATTCGTCTCGACGAAGAGATTGGTGTATATTGCAGGCGATGTGGTTGGGTTGTCACTGATATTAAAGATGTCTCGCCACAAGTGGTTGATAAATTTCCTTATGAAGGGTCCGGACAAAGGGTGTCGTTTGGTGATGCAAATGTCTCACACTTTCATGACTCCTACTTCAATGTTTTTAATAATGACTTGGGGACTAATTTCTCGTACGACGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACAAACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACATTGAACTTCAAGGGTTAAAGAATGCCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCACATGCTCCGGGAACTGGAAAGACAAAGCTGACAATCATGTTTCTCAAGGCTTATTTAAAAGTTTTTCCAAAATGCTTGCCGGTCATTGTTGCTCCTGCTGGTTTGTTGCTTACTTGGGAAGAAGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAAGAATCCTGAGTTATCTGTTAAAGAGCTTGATGATGTTGTTAATGCAACTAATTGGTCTAATTCACAGTGGCATAGTACCGACGAGACACGAATGGCTAAACTGATTTCGTGGTTCAAAGAAACGAGCATTCTGGGAATCAGTTACAGTTTGTTCAAGAAGCTAGCAGGCGGAGAAGGGGCTTTACAAAAGAGAAAAGAAAACAGTTATATGAGAAAGGCTTTACTTGAAGCTCCAGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTCGTGTTTGGAAGGTGTTGTCAAAAATTCAAACAAAGAAGCGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAACTGTACAACACCTTTAGCATAGTGAAGCCTTCTTTTCCTAACACGATACCGCACAAGCTGAAAAAGTTTTGCCAAAAACATAAGAAAGCAGCAAAAGAGTGGAGTTGGGAACCAGTTGCTGAAAACAGTACAACAGGAAATTCTACTGATGATAAGATCAAGCATTTGAAGTTGCTAATGGATCCCTTTGTTCATGTTTACAAAGGCGCGATTCTTCAAAAGAAGATTCCAGGGTTAAGAGATTGTGTGCTTCGTTTGAGGCCAGACAGTTTACAGAAGCAAATTCTTGAGAGCATTCAAAGTTCTCAGGGCATATTGAACTTTGAACATAAGCTGATACTGGCCTCAATCCATCCATCACTATTCCTAAAATGCAAACTTTTGGAGAAAGAAGAATCTATTGTCGACAAGGAACGACTTGAAAAAGTTAGATTGGATCCACATGTCGGCGTCAAAACAAAATTTTTGGTGGAGTTTGTTAATCTTTGTAATGCTGTTAATGAAAAAGTCCTTGTGTTCAGCCAATTCACCGCTCCTTTACGCTTAATTATTGAGCAATTAAACTCAATCTTCAATTGGGCCGAGGGGAAGGAAATACTCTACATGGATGGCAAGATTGATCTGAAGGAAAAACAGTCTTTAATCCATAACTTCAATGATGCAAACAGCAAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGATTGTGCTACTTGATGTTGTATGGAATCCTTCTGTCGAACGACAGGCTATCAGTAGAGCATATAGGATTGGACAAGAGAGAGTCGTGTACACGTACCATCTACTCATGCACGGGACTGCCGAGTGTGTCAAATATAGCAAACAGGCCGAAAAGGACCGGTTGTCTGAACTAGTGTTTTCGGATAATGGCAAGGGAAAAAACCGTGCGGTGAACTTTGAAGATGGTATTCTTGATCGAATGCTTCGGCACAAAAAACTTAAAGACATATTCTTCAATATTGCTCACTATACAAAACAAGTTCATGTGATGCTCACTTTAACTGTTATTGAGTTCCTTGGAAGATATCTGACCTTGGAGTTGGAATGGTTGTCAGTTTGGAGCTGTGTAGGATTTGGTATCGATGCAGATTGCGGTACTATTGTTTTTTCGTCCAGCAGTACTGATAGGTCGTCTTCCTTCTTTCTATTTTCTATAGCAATGCTTGAGAAGGTAGTTGTGTGCCGGTTATATGAGGTTCTTAGGCGTGGAAACAATGTCAGGCTTCAGACTGTTGTACTTTCTACCGGTAGAACGAAGCTGATCTTATCTGAAACTTTCAGTTTCTCTCGATGGAGGCTGCAATCTTATTATCAGTTTGAAAGTTTGTCTCGTCCGATTCAGTGCTTAGAGTTAACTCTCATGCCGGCGTTGGCACTGGCACAACCCCTTATGAAATCAAATGCTACTAGAATAGCTTCTAAATCCAATGCTTCTACTGCTGAAAGCATAAAACTGAATATGAGTTTTACAGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGACAAACTGATTCTGAGACACTTGCACGTGTCAGTAATCAAGGAGGCATAAAGGAAATCCTAACTCAAAGAAGAAGTGGTAAAGGAAAACAAATATGCACACCATGCATAGAACCAAAGTAA 3837 0.3954 MDGASSITQSKNVSLFGSVPFHGSCSLKTKRRRSDMCLSSKKSKSDEESLVWHKQVNFIRIDSDEERDQEWSKFSKGYDDDVIWIDTDEEGDQEELKFSKACVEQVENVVGDADDVICLDSDEEGDKEELNFSDKKFSKACVEQVEIVDNADADKVGDEEWLGYPNKNKFEVDGINIQNEEQSGDIVGEGGLEEYYNDDEEDEFDDGEESEEIETSDEEFLVDNVNDVFESDDSRGGGGGGDDDVQSVRGLRVGVESDSIKPKQKKMIERKESDYKGRASSSSGEKKESMELRLNQRGKSTVFLPKELRLIELLAGYYWGNKNSRIQNDSPVLEMKDVIRRDTRSPPVCTETAPLIWSLKKAEKVQKTKSEKEEEVLWDKMETSLRELEAESMMGNLGTNKAVKEKMESSSSECDHDIRLDEEIGVYCRRCGWVVTDIKDVSPQVVDKFPYEGSGQRVSFGDANVSHFHDSYFNVFNNDLGTNFSYDERTVWDLIPDVKQTLYSHQQEGFEFIWNKLVGNIELQGLKNANLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVIVAPAGLLLTWEEEFKKWDIGVPFHNLKNPELSVKELDDVVNATNWSNSQWHSTDETRMAKLISWFKETSILGISYSLFKKLAGGEGALQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSRVWKVLSKIQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPHKLKKFCQKHKKAAKEWSWEPVAENSTTGNSTDDKIKHLKLLMDPFVHVYKGAILQKKIPGLRDCVLRLRPDSLQKQILESIQSSQGILNFEHKLILASIHPSLFLKCKLLEKEESIVDKERLEKVRLDPHVGVKTKFLVEFVNLCNAVNEKVLVFSQFTAPLRLIIEQLNSIFNWAEGKEILYMDGKIDLKEKQSLIHNFNDANSKAKILLACTKACSEGISLVGASRIVLLDVVWNPSVERQAISRAYRIGQERVVYTYHLLMHGTAECVKYSKQAEKDRLSELVFSDNGKGKNRAVNFEDGILDRMLRHKKLKDIFFNIAHYTKQVHVMLTLTVIEFLGRYLTLELEWLSVWSCVGFGIDADCGTIVFSSSSTDRSSSFFLFSIAMLEKVVVCRLYEVLRRGNNVRLQTVVLSTGRTKLILSETFSFSRWRLQSYYQFESLSRPIQCLELTLMPALALAQPLMKSNATRIASKSNASTAESIKLNMSFTVDYLLGKQAFFGQTDSETLARVSNQGGIKEILTQRRSGKGKQICTPCIEPK 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01346 1278 MobiDBLite consensus disorder prediction 28 46 - -
Vivi6g01346 1278 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 50 1063 IPR044567 GO:0080188
Vivi6g01346 1278 CDD SF2_C_SNF 867 999 - -
Vivi6g01346 1278 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 876 1040 IPR001650 -
Vivi6g01346 1278 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 729 IPR014001 -
Vivi6g01346 1278 SMART ultradead3 498 737 IPR014001 -
Vivi6g01346 1278 Pfam Helicase conserved C-terminal domain 878 988 IPR001650 -
Vivi6g01346 1278 Pfam SNF2-related domain 524 819 IPR000330 GO:0005524|GO:0140658
Vivi6g01346 1278 MobiDBLite consensus disorder prediction 180 292 - -
Vivi6g01346 1278 MobiDBLite consensus disorder prediction 256 292 - -
Vivi6g01346 1278 Gene3D - 479 772 IPR038718 -
Vivi6g01346 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 747 IPR027417 -
Vivi6g01346 1278 Gene3D - 795 1063 IPR027417 -
Vivi6g01346 1278 SMART helicmild6 903 988 IPR001650 -
Vivi6g01346 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 1026 IPR027417 -
Vivi6g01346 1278 MobiDBLite consensus disorder prediction 192 226 - -
Vivi6g01346 1278 MobiDBLite consensus disorder prediction 20 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01346 Vivi-Chr6 56257405 56263917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01346 885 1040 RAD5 or RAD16-like Gene Family AT5G05130 36.306 2.64e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g01346 SNF2_N 2.2e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01346 K10875 - gmx:100812737 825.854