Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01345 ATGGTTGGTGTTTCTAGTCGAACTCGTAGTAAGAATGTTCCACTCTTCGGTAGTATTCCATTTCATGGCTCGTGTGCGTGTTCGTTGAAATCTAACCGTAGAAAAAGTGATATAGGTTTGAGCTCTAAAAAAAGAAAGCCAAATGAAGAGCCTTTTGTGTTGCATGAAGGTGTTGATGTTATTCCCATTGACAGTGACAAGGAAGGAGATGAAGAGCCTTCTGTGTTGAAATTTTCTGAGGCATGTGCTGAACAAGTGGAAAATTTTGGTAATGGTGATGCTGACGAGGTTGGAGATGAGGCTTGGTTGGAATATCTTAACAAGAACAAGTTTGAGGTTGGCGATATTGATGTTAAAAATGAGGAACAAAGTGGAGATATTGTTGGTGAAGGAGGGTTGGAAGATTGTGAAATAAACAGTTTTGAGGGTTGTGTTAATGCTGCTGATGATAATGGTGAGGGGAAAGAAGCGAAGAAAAAGGGTTGGAAGGAGGAGGAGAAGAATATGCGTTGGAAGAAGAATGGTCCGCCGGAGGGTGTTTCGAGTCGTACTCGGAGCAAGAATGTTCTGCTGTTTGGTAGTCTTTCATTTCATGGCTCAGGTTCGTTGGAATCTAAGAAAAGGAAGCCAAATGAAGAGTCTTTTGTGTTGCATGAAGATGATGATGTTATTCGCATTGGTAGTGACGAGGAAGGAGATGAAGAGGGGTTGAAATTTTCTGATAAGAAATTTTCTCAAAGTTGTGTTGATAATGGTGATGTGGAAGGGTTTGAAGATTGTGAAAGAAACAACTTTGAGGGTTGTGTTGATGGTGATGCTGATGCTGACGAGGTTGGAGATGAGGATTGGTTGAGATATTGTAATAAGAACAAATTTGAGGGTGACATTGATGTTGAAAATGAGGAACAAAGTGGCGATAGTGTTGATAATGGTGGTGAAGGAGGGTTAGAAAATTGTGAAAGAAACAGGTTTGAGGGTTGTATTGGTGTTGAGAATGAAGTAGAGAGAGAGAAAAATGGAGGACTTGGTGATTTAGTTGAAAAAGATGAAATCTTTGATGATGAGAAGTGTGGTTTGATATCTGAAAACATGATTATAGGTTCAGATCATGAATCTGATGATGATAAAGATGACGGTGATGATCAAGATGAAGGAGGGTTGAAAAATTGTGAAAATAATAGTTTTGAAGGTTGTGTTGGTGTTGAAAATGAAGCAGTGAGCGAGAAAAATGGAGGAATTGGTGAGTTAGCTGAAAAAGATGAAAGCTTTGATGATGAAGAGTGTGGTTTGATATCTGAAAACCTGATTACAGATTCAGAGGATGAATCTGAGTATGAAGATGAATCTGATGATGACGATGATGATGATGAAGATGATGAAGATGAATATGATGAAAGTGAGGAAATTGAAACTAGTGATGAAGAATTTCAAGTTGATGAGGTGAATGAAGTTTCTGACAGTGATAATAGCAGTTCTTCTTATGCTGATGATGATGATGATAATGGTGAGGAGAAAGAAGCGAAGAAAAAGGGTTGGAGGAAGAAAGAGGAGGAGGAGGAGGTGGTGGTTGTGGAGGAAGAGGTGGAGAAAGATGTGGGTTTGGGAATGGTTTGGCAAGAATGTGACAATGAGCTGGCGGAGATGGTGGGTCAAAATAATGAAATTTCTGAGAGAAATAATGCCTTAAACAAAAAGGTTTCTTATGTTCCAATGGAGGCTCCTTCTTCTTCTTCTAAATTGCATCAAGCATCTAAAGGTATGCAAATGAAAGAGAAAAATGTGTCTGATGATGATGATGATGATGATAATGTTTATGTTGGCAAAACCAAATCCAAGTCCAAATCCAAAGCCAAAGAAAGTGTTATTATTGGTGATTTTGATGAAGAAGAAATGCAATCTGTTCAAGCTTTAGGTGTTAATGATGAAAGTGATTCTTCTATTCAAACAAAACAGAAGGAGATGAAGAGTTCAGAGAAACAGAAAATGACGGAGATGAAGGGAAGCAATTATAAAGGTAGAGCTAGCAGCAATAGTGGCGAGAAGAAGGAATCCGTAGAGTTGTGTTTGAATCAAAGGGGAAAAAGCACAGTTTTTATGCCGAAGGAGTTACGTTTACGCCAACTCCTTGCTGAATACTATTGGGGAAACAAGAATAGTAGAATTCAGAATGATTCACCTATATTGGAGATGAAAGATGTTATTTGGCGTGATACAAGATCACCACCTGTTTGTAATGAGACAGCTCCATTGATATGGAGCCTTAAAAAGGTGGAGAAAGTGCAAAAGACCAAGACCGAGGAGGAGGAGGAAGTACTATGGGATATAATGGATACAAGCCTTAGAGAACTTGATGCTGAATCCATGATCGGAAATTTGGGGACCAATGAAGTTGCTCAGGAAAAAATTGGAAGTTCATCCCCTGACTGTGATCATGACATTCGTCTCGACGAAGAGATTGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTCACTGATATTAAAGATGTCTCACCACAAGTGGTTGATAAATATCCCTACGAAGGTTCGGGACAAAGGGCTTCGTTTGGTGATGCAAATGTCTCACACTTTCAGGACTCACACTTCAATGTTTCTGATAATGACTCGGGGACTAATTTCTCTTTCGATGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACAGACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACATCGAGCTTCAAGCGTTAAAGAATGCCAATCTTCAAAGGGAGGGCGGTTGCATTATTTCACATGCTCCTGGAACTGGAAAGACAAAGCTGACAATCATGTTTCTCAAGGCGTATTTAAAAGTTTTTCCGAAATGCTTGCCGGTCATTGTTGCTCCTGCTGGATTGTTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAACAATCCTGAGTTATCTGTTAAAGAGCATGACGATGTTGTTAATGCAACTAATTGGTCTAATACACGGCGGCATAGTACGGAAGAGACACGAATGGCTAAACTGATTTTGTGGTTCAAAGAAACGAGCATTCTGGGAATCAGTTACACTTTGTTCAAGGATCTAGCCCACGGAGAAGAGGAATGCAAAGATAAGAAAAAGAATAATCAGAAGAGAAAAGAAAACAGTTATATGAGAAAGGCTTTGCTTGAAGCTCCTGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTCGTGTTTGGAAGGTGTTGTCAAAAATTCAAACAAAGAAGCGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAACTGTACAACACTTTCAGCATAGTGAAGCCTTCTTTTCCTAACACGATACCGCCCAAGCTGAAAAAGTTTTGCCTGAAACATAAGGAAGCAGCAAGAAAATGGAGTTGGGAACCGGTTACTGGAAACAGTACAACAGGAAATCCTTCCGATGATAAGATCAAGCATTTGAAGTTGCTAATGGATCCCTTTGTCCATGTTTACAAAGGCGCGATTCTTCAAAAGAAGCTTTTCGGATTAAGAGATTGTGTGCTTCGTTTGAAGCCGGACAGTTTTCAGAAACAAATTCTTGAGAGCATTAAAATTTCTCAGAACATATTGAACTTTGAGCATAAGCTGGCACTGGCATCGGTCCATCCGTCTCTATTCCTCGAAAGCAAACTATTGGAAGAAGAAGAATCTGTTGTCGACAAGGAACGGCTTGAAAAAGTTAGATTGGATCCACATGTCGGCGTCAAAGCAAAATTTTTGGTGGAGTTTGTTAATCTTTGTAATGCTGTTAATGAAAAAGTTCTCGTGTTCAGCCAATTCATCCCCCCTTTACGCTTAATTGTTGAGCAATTAAACTCAATCTTCAATTGGGCCGAGGGGAAAGAAATACTCTACATGGATGGCATGATTGATCTGAAGGAAAAGCAGTCTTTAATTCACAACTTCAATGATGCAAACAGCAAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAATTGGAGCGTCGAGGGTTGTGCTACTTGATGTTGTATGGAATCCTTCTGTCGAGCGACAGGCAATCAGTAGAGCATATAGGATTGGACAAAAGAGAACTGTGTACACGTACCATCTGCTCACGCACGAGACTTCCGAGTGCGTTAAATATTTCAAACAGGCCGAAAAGGACCGGTTGTCTGAACTAGTATTTTCAGATAATGACAAGGGCAAAAACCGTGCGGTAAACCTTGAAGATGGTATTCTGGATCTAATGCTTCAGCACAAAAAACTTAAAGACATGTTTGTCGAGTGTGTGGTACAGCCGAAGGAAAGAGATTTGGTGGAGAGTTATTATTATTGA 4425 0.3973 MVGVSSRTRSKNVPLFGSIPFHGSCACSLKSNRRKSDIGLSSKKRKPNEEPFVLHEGVDVIPIDSDKEGDEEPSVLKFSEACAEQVENFGNGDADEVGDEAWLEYLNKNKFEVGDIDVKNEEQSGDIVGEGGLEDCEINSFEGCVNAADDNGEGKEAKKKGWKEEEKNMRWKKNGPPEGVSSRTRSKNVLLFGSLSFHGSGSLESKKRKPNEESFVLHEDDDVIRIGSDEEGDEEGLKFSDKKFSQSCVDNGDVEGFEDCERNNFEGCVDGDADADEVGDEDWLRYCNKNKFEGDIDVENEEQSGDSVDNGGEGGLENCERNRFEGCIGVENEVEREKNGGLGDLVEKDEIFDDEKCGLISENMIIGSDHESDDDKDDGDDQDEGGLKNCENNSFEGCVGVENEAVSEKNGGIGELAEKDESFDDEECGLISENLITDSEDESEYEDESDDDDDDDEDDEDEYDESEEIETSDEEFQVDEVNEVSDSDNSSSSYADDDDDNGEEKEAKKKGWRKKEEEEEVVVVEEEVEKDVGLGMVWQECDNELAEMVGQNNEISERNNALNKKVSYVPMEAPSSSSKLHQASKGMQMKEKNVSDDDDDDDNVYVGKTKSKSKSKAKESVIIGDFDEEEMQSVQALGVNDESDSSIQTKQKEMKSSEKQKMTEMKGSNYKGRASSNSGEKKESVELCLNQRGKSTVFMPKELRLRQLLAEYYWGNKNSRIQNDSPILEMKDVIWRDTRSPPVCNETAPLIWSLKKVEKVQKTKTEEEEEVLWDIMDTSLRELDAESMIGNLGTNEVAQEKIGSSSPDCDHDIRLDEEIGVYCRRCGWVVTDIKDVSPQVVDKYPYEGSGQRASFGDANVSHFQDSHFNVSDNDSGTNFSFDERTVWDLIPDVKQTLYSHQQEGFEFIWNKLVGNIELQALKNANLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNNPELSVKEHDDVVNATNWSNTRRHSTEETRMAKLILWFKETSILGISYTLFKDLAHGEEECKDKKKNNQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSRVWKVLSKIQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPPKLKKFCLKHKEAARKWSWEPVTGNSTTGNPSDDKIKHLKLLMDPFVHVYKGAILQKKLFGLRDCVLRLKPDSFQKQILESIKISQNILNFEHKLALASVHPSLFLESKLLEEEESVVDKERLEKVRLDPHVGVKAKFLVEFVNLCNAVNEKVLVFSQFIPPLRLIVEQLNSIFNWAEGKEILYMDGMIDLKEKQSLIHNFNDANSKAKILLACTKACSEGISLIGASRVVLLDVVWNPSVERQAISRAYRIGQKRTVYTYHLLTHETSECVKYFKQAEKDRLSELVFSDNDKGKNRAVNLEDGILDLMLQHKKLKDMFVECVVQPKERDLVESYYY 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 202 238 - -
Vivi6g01345 1474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 923 1131 IPR014001 -
Vivi6g01345 1474 CDD SF2_C_SNF 1269 1401 - -
Vivi6g01345 1474 Coils Coil 545 565 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 502 520 - -
Vivi6g01345 1474 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vivi6g01345 1474 SMART ultradead3 893 1143 IPR014001 -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 149 173 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 437 482 - -
Vivi6g01345 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1076 1429 IPR027417 -
Vivi6g01345 1474 Gene3D - 1200 1466 IPR027417 -
Vivi6g01345 1474 Gene3D - 870 1163 IPR038718 -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 362 521 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 295 319 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 636 684 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 646 666 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 145 185 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 199 238 - -
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 603 619 - -
Vivi6g01345 1474 Pfam SNF2-related domain 916 1217 IPR000330 GO:0005524|GO:0140658
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 570 584 - -
Vivi6g01345 1474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1144 IPR027417 -
Vivi6g01345 1474 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 558 1467 IPR044567 GO:0080188
Vivi6g01345 1474 MobiDBLite consensus disorder prediction 570 619 - -
Vivi6g01345 1474 SMART helicmild6 1301 1390 IPR001650 -
Vivi6g01345 1474 Pfam Helicase conserved C-terminal domain 1279 1390 IPR001650 -
Vivi6g01345 1474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1278 1431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01345 Vivi-Chr6 56248415 56253759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01345 1287 1446 RAD5 or RAD16-like Gene Family AT5G05130 37.888 1.72e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g01345 SNF2_N 5.5e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01345 K10875 - gmx:100806733 822.002