Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01344 ATGGCTGGTGTTTCCAGTCGAACTCGAAGTAAAAATGTTCCGCTCTTCGGTAGTATTCCATTTCATGGTTCATGTTCTTGTTCGTTGAAAACCAAGCGTAGAAGAAGTGACATAGGTTTGAGCTCTAAAAAGAGGAAGCCAAATGAAGAGTCTTTTGTGTTGCATGAACAAGTTAATGTTATTTGCATTGACATTGACGAGGAAGGAGATAAAGAGGGGTTGAAATTTTCTGAGGGTTGTGTTGAACAAGTAGATAATGTTGATAATGGTGATGCTGATGAGGTAGGAGATGAGGATTGGTTGGAATATCTTAACAAGAACAAGTTTGAGGTTGACGACATAGATGTTAAAAATGAGGAACAAAGTGGAGATATTGTTGGTGAAGGAGGGTTGGAAGATGGTGAAATAAACAGTTTTGAGGCTTGTGTGGATGTTGAAAATGAAGTAGAGAGCGAGGATAATGGTGGAATTGGTGAGTTAGTTGTAAAAGATGAAAGCTTTCATGATGAAAAGTGTGGTTCGATGTCTGAAAACCCGATTATAGATTCAGATGATGACCTTGATGAATGCGATGAAAGTGAAGAAAGTGAGGAAATAGAGACTAGTGATGAAGAATTTCAAGTTGATGAGGTAGATGAAGTTTCCGATGATGATGGTGATAACAGTGAGGAGAAAGAAGCGAAGAAAAAGGGTTGGAAGAAAGAGGAGGTGGTGGTGGAGGAAAAGGTGGAGAAAGAGGTGGAGGAGGAGGAGGAGGTGGGGGTGGAGAAAGAGGTGGAGGAGGAGGAGGTGGTGGTGGAGGAAGAGGTGGAGAAAGATGTGGATTTGGAAATGGTTTGGCAAGAATATGACAATGTGCTGGAAGAGATGGTGAGAGAGGCCAAGGGTCAAAATAGTAATATTGAGGAGGTAAAGATTGATAATAGTCCATCTTCTGTAAACAATAATAAATTGGAGCATCCAGATGATGGTAATGCAAGATCCTCTAATGCCTTAAACAAAAAGGGTTCTTTTGTTCCAATGGAGGCTCCTTCTTCTTCTAAATTGCATCAAGCATCAGAGACACTGACATCAAAAGGCGTGCAAATGGGTTCGGAGGATGAGGAAGACGAGGAGGAGGAGGAGTACAAAGAGGTGGATTTGAAGAAGGATTGGCAAGAATACGATAATGTGCTGGCGGAGATGGTGAGAGAGGCCAAGGGTCAACATACTCCATCTTCTGTAAATAATGATGAATTGGAGCATGCAAATGATGGCAATGTAAGAATCTCTAATGTCTCTCATGGTGATAATGTTTATGTTGGCAAATCCAAAACCAAATCCAAAGCCAAAGTTACACCTAAAGAAAGTGTGATTATTAGTGATTTTGATGAAGAAAAAATACAACCTGCTAGAGGTTTAGGTATTGATGATGGAATTGATTCTTCTATTCACACAAAACAGAAGGAGATGAAGAGTTCAGAGAAACAGAAAATGACAGAGATGAAGGGAAGAGATTATAAAGGTAGAGCTAGCACCAGTAGTGGCGAGAAGAAGGAATCCATGGAGTTGCGTTTGAACCAAAGGGGAAAAAGCACAGTTTTTATGCCAAAGGAGTTGCGCTTAGTCGAACTCCTTGCTGAATACTATTGGGGAAACAAGAATAATAAAATTCAGAATGATTCACCTGTGTTGGAGATGAAAGATGTTATTCGGCATTATACACGCCCACCACCTGTTTCTAACGTGACAGCTCCGTTGATATGGAGCCTTAAAATGGTGGAGAAAGTGCAAAAGACCAAGAACGAGAAGGAGGAGGAAGTACTATGGGATCAAATAGATACAACCCTTAGAGAACTTGAAGCTGAATCCATGATCGGGAATTTGGGGACCAATGAAGCTACTCAGAAAAAAATCGGAAGTCCATTCTCTGAGTGTGAACACGACATCTATCTCGACGAAGAGATTGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTCACTGATATTAAAGATGTCTCACCACAAGTGGTTGATAAATTTCCCTATGAAGGGTCGGGACAAAGGGCTTCGTTTGGTGATGCAAATGTCTCACACTTTCATGACTCGCACTTCAATGTTTCTGAACATGACTCCGAGACTAATTTCTCTTATGATGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACAGACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACATCGAGATTCAAGGGTTAAAGAATGCCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCACATGCTCCCGGAACTGGAAAGACAAAGCTGACAATCATGTTTCTCAAGGCTTATTTAAAAGTTTTTCCGAAATGCTTGCCGGTCATTGTTGCTCCTGCTGGTTTGTTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGAGTTCCATTTCATAATTTGAACAATCCTGAGTTATCTGTTAAAGAGCTTGATGATGTTGTTAATGCAACTAATTGGTCTAATTCACAGCGGCATAGTACCGACGAGACACGAATGGCTAAACTGATTTCGTGGTTCAAAGAAACGAGCATTCTGGGAATCAGTTACAGTTTGTTCAAGGAGCTAGCAGGCGGAGAAGGTGCTTTACAGAAGAGAAAAGAAAACAGTTATATGAGAAAGGCTTTACTTGAAGCTCCAGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTCGTGTTTGGAAGGTGTTGTCAAAAATTCAAACAAAGAAGAGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAATTGTACAACACTTTCAGCATAGTGAAGCCTTCTTTTCCTAAAACGATACCGCTCAAGCTGAAAAAGTTTTGCCAGAAACGTAAGAAAGCAGGAAAAAAATGGAGTTGGGAACCAGTTACTGGAAACAGTACAACAGGACATCCCTCCGATGATAAGATCAAGCATTTGAAGTTGCTAATGGATCCCTTTGTTCATGTTTACAAAGGCGCGATTCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGCGTGCTTAGTTTGAGGCCGGACAGTTTTCAGAAGCAAATTCTTGAGAGCATTCAAAGTTCTCAGGACATATTTAACTTTGAGCGTAAGCTGATAATGGCATCAGTCCATCCGTCTCTATTCCTCGAATGCAAACTTTTGAAAAAAGAAGAATCTGTTGTCGACAGGGAACAGCTAGAAAAGCTTCGATTGAGTCCACATGTTGGTGTCAAAACAAAATTTTTGGTGGAGTTTGTTAATCTTTGTGTTGCTGTTAATGAAAAAGTCCTTGTGTTCAGCCAATTCACCGCTCCTTTACGCTTAATTGTTGAGCAATTCAACTCATCCTTTAATTGGACTGAGGGGAAGGAAATGCTCTACATGGATGGCAAGGTTGATCTAAAGGAAAAACAGTCTTTAATCCATAACTTCAATGATGCAAACAGCAAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCGTCGAGGGTTGTGCTACTTGATGTTGTATGGAATCCTTCTGTCGAGCGACAAGCTATCAGTCGAGCATATAGGATTGGACAAAAGAGAGTTGTGTACACGTACCATCTGCTCACACACGAGACTACCGAGTGCCTCAAATATTTCAAACAGGCCGAAAAAGACCGGTTGTCTGAACTAGTATTTTCGGATAATAACAAGGGCAAAAACCGTGCAGGGAACATTGAAGATGGTATTCTTGATCTAATGCTTCAGCACGAAAAACTTAAAGACATGTTTGTCGAGTGTGTGGTACAGCCGAAGGAAAGAGATTTGGTGGAGAGTTATTATTATTGA 3894 0.4063 MAGVSSRTRSKNVPLFGSIPFHGSCSCSLKTKRRRSDIGLSSKKRKPNEESFVLHEQVNVICIDIDEEGDKEGLKFSEGCVEQVDNVDNGDADEVGDEDWLEYLNKNKFEVDDIDVKNEEQSGDIVGEGGLEDGEINSFEACVDVENEVESEDNGGIGELVVKDESFHDEKCGSMSENPIIDSDDDLDECDESEESEEIETSDEEFQVDEVDEVSDDDGDNSEEKEAKKKGWKKEEVVVEEKVEKEVEEEEEVGVEKEVEEEEVVVEEEVEKDVDLEMVWQEYDNVLEEMVREAKGQNSNIEEVKIDNSPSSVNNNKLEHPDDGNARSSNALNKKGSFVPMEAPSSSKLHQASETLTSKGVQMGSEDEEDEEEEEYKEVDLKKDWQEYDNVLAEMVREAKGQHTPSSVNNDELEHANDGNVRISNVSHGDNVYVGKSKTKSKAKVTPKESVIISDFDEEKIQPARGLGIDDGIDSSIHTKQKEMKSSEKQKMTEMKGRDYKGRASTSSGEKKESMELRLNQRGKSTVFMPKELRLVELLAEYYWGNKNNKIQNDSPVLEMKDVIRHYTRPPPVSNVTAPLIWSLKMVEKVQKTKNEKEEEVLWDQIDTTLRELEAESMIGNLGTNEATQKKIGSPFSECEHDIYLDEEIGVYCRRCGWVVTDIKDVSPQVVDKFPYEGSGQRASFGDANVSHFHDSHFNVSEHDSETNFSYDERTVWDLIPDVKQTLYSHQQEGFEFIWNKLVGNIEIQGLKNANLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVIVAPAGLLLTWEDEFKKWDIGVPFHNLNNPELSVKELDDVVNATNWSNSQRHSTDETRMAKLISWFKETSILGISYSLFKELAGGEGALQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSRVWKVLSKIQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPKTIPLKLKKFCQKRKKAGKKWSWEPVTGNSTTGHPSDDKIKHLKLLMDPFVHVYKGAILQKKLPGLRDCVLSLRPDSFQKQILESIQSSQDIFNFERKLIMASVHPSLFLECKLLKKEESVVDREQLEKLRLSPHVGVKTKFLVEFVNLCVAVNEKVLVFSQFTAPLRLIVEQFNSSFNWTEGKEMLYMDGKVDLKEKQSLIHNFNDANSKAKILLACTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTHETTECLKYFKQAEKDRLSELVFSDNNKGKNRAGNIEDGILDLMLQHEKLKDMFVECVVQPKERDLVESYYY 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 399 435 - -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 294 382 - -
Vivi6g01344 1297 Coils Coil 287 307 - -
Vivi6g01344 1297 SMART helicmild6 1124 1213 IPR001650 -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 168 270 - -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 402 434 - -
Vivi6g01344 1297 Gene3D - 696 983 IPR038718 -
Vivi6g01344 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 899 1252 IPR027417 -
Vivi6g01344 1297 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vivi6g01344 1297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1101 1254 IPR001650 -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 482 518 - -
Vivi6g01344 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 308 1290 IPR044567 GO:0080188
Vivi6g01344 1297 Pfam SNF2-related domain 748 1059 IPR000330 GO:0005524|GO:0140658
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 181 220 - -
Vivi6g01344 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 972 IPR027417 -
Vivi6g01344 1297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 753 954 IPR014001 -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 344 362 - -
Vivi6g01344 1297 SMART ultradead3 723 962 IPR014001 -
Vivi6g01344 1297 Pfam Helicase conserved C-terminal domain 1106 1213 IPR001650 -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 301 319 - -
Vivi6g01344 1297 Gene3D - 1020 1289 IPR027417 -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 242 270 - -
Vivi6g01344 1297 CDD SF2_C_SNF 1092 1224 - -
Vivi6g01344 1297 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01344 Vivi-Chr6 56193461 56198269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01344 1111 1250 RAD5 or RAD16-like Gene Family AT5G43530 38.571 3.23e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g01344 SNF2_N 4.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01344 K10875 - gmx:100812737 843.188