Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01326 ATGGAAGGCTGGGGGCAAGTAATTGACATGCGGCCCAAGTTTGACAAGAATGGTCTTGGTTTCAATCCTAGAAAGCATAATGCATCTCTCAAGCCTGATATCCTTAGCCCGATCAAGTTTGTGACTGGGGGTGTCATTCAAGACGGTCAGGTTAATGCCATTACCAATGGCGAGGAGGTGGATAGTGACTTGTACTTTTGTGCACTCATAACTGACTCTTCTTCCATGACACTTTCACCATCTTTACAAAGCAGAGAAGCAAGTGCTTTGTTGAAGTGGAAAGAAAGTCTTGACAGCCAAAGCCAAACTACATTGTCTTCATGGAGTGGCAATAATTCATGCAACTGGCTTGGAGTTTCCTGCAATGAAGATTCCATGTCTGTCTCGACAGTAAATCTCACAAATATGAGACTGAAAGGTACGTTTGAAAGTTTTAACTTCTCGTCCTTTCCAAATATTAAAATATATCTTCTGAACAATTATCTTTCTGGATCTATACCTAGCGAAATTGGCAAGTTATTGCACATGAAAAAATTATTTCTTTCTGGAAATTATCTTTCTGGATCAATTCCTCGAGAAATTGGAAAACTGGAGAACATAACCAATCTACTTCTTAATGACAATAATCTTTCTGGTTCTATTCCTAAAGAAATTGGAATGATGAGATCTATTGTAGACATAGATTTGTCAAATAATAATCTGTGTGGTAAAATTCCAGCTGCAATTGGAAACTTAAGCCATTTACGATATCTCGGCTTTCCGGGAAACCATCTCAGTGGAACAATTCCTATGGAATTGAATATACTTGGTAATTTGGAAACATTCAGTGTATTTGATAATAATTTTACAGGTCAGTTTCCTCAGAACATTTGCGTTGGTGCAAACCTGAAATATATTGGTGCTTACAATAACCATTTCATAGGGCGAGTTCTAAGGAGTTTGAAGAATTGTTCAAGCCTTATTAGACTTAGGCTTGAAAATAACCATTTTGAGGAAAACATAACTAATTATTTTGGTGTAAACCCAAATCTGAAGTTCATGGGATTGGATAACAATAATTTTTATGGCCACCTTTCATCTAACTTGGGAAAGTTTCATAACTTGACACATCTTCACATTTCCCGAAATCATATATCAGGCTCTATACCACCTGAACTCGAAGAAGCATCCAACTTATATTCAATTGACTTATCATCAAACCATCTTACAGGAGAAATTCCAAAGGAGTTAGGAAACTTGACAAAGTTGGGCAGACTCATTTTAAACAACAATCGTCTGTCTGGTAATGTAAAAGTAGCATCCCTAAAGGAACTTGAAATCTTAGATGTTGCAGCAAATAATCTAAGCGGTTTCATCCCAAAACAGCTTGTCACTTCGTCCAGATTATTTGACCTAAATTTGAGCCATAACAAACTTAGAGGAAATATTCCTGATGAGTTTGGTAAATTTCATGCCCTTGAAAGTCTTGATCTGAGTGGAAATATTTTGGATGGAACCATACCACAAATGCTTGGAAAACTGACACACTTGGAAACATTGAATATTTCGCATAACAACCTTTCCGGATTTATCCCTTCTTCCATTGATCAGATGATTAGTTTGTCATTTGTTGATATATCATACAACCAATTGAAAGGTCCACTTCCAGATATGCGAGTATTCAATAATGCAACAATTGAAGTGTTGAGAAATAATTCAGACTTGTGCGGTAAAGTTTTAGGGTTGAAGTCGTGCAGTGGATCTCATAATCATAAGACTAACAATCTGATCTTATTGATAGTTTTACCTCTAGCACCAGGAATTCTAATGCTAGCATTTGTTTGTTTCAAACTCTCAAAGCATTTATGCCGAACGCGAACCACAAGAGACAATCAGGATGGTGGAATTATTGTTGCTCCAAATAATGCATTCACAATATGGAGTTTTGATGGGAAAATGGTGTATGAGAACATCATTGAAGCAACAGAAGAGTTTGATGACAAATATCTCATTGGAGTAGGAACACATGGAAGTGTCTACAAAGCTGAGTTGCACACAGGTCAAATTGTTGCTGTTAAGAAAATTCATTTAGCAACAAATGGAGAAAATTCTAATATAAGATGTTTCACAAGTGAGATTCAAGCTCTGACAGAAATTCGACATCGTAACATTGTGAAGCTATATGGATTTTGTTCACATTCACGCGTGTCACTTTTGGTCTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAACAAGCAATTGAATTTGATTGGAATAAGAGGGTGAATGTCATTAAAGATGTAGCAAATGCTTTATGCTATATGCACCTTGATTGCTTCCCTCCGATTGTTCACCGAGATATATCAAGCAAGAATATACTTATGGATTTAGAATATGTGGCTCGTGTCTCAGATTTTGGAACAGCTAAACTTCTTAATCCTAATTCAGCCAACTGGACCTCTTTTGCAGGCACATTAGGATATTCTGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTGGCATTGGAAATACTTCATGGAAAACACCCTGGAGACATTATATCTAATAGTATACAGTGGAACACTATGGCGGGACCAACACTGGATACTATGTCATTCATGGATATGTTGGACCAACGTCTCCCTCGTTCAATGAATACTAAAACTAAGCAGATATTATCCATTACGAAGACATTAATTTCTTGCTTGGATCAAAGTCCACGATCTCGTCCAACAATGGAGCAGGTTTCCATGGAGATTTCAATAGCATCATACTTTTGTTAA 2814 0.3685 MEGWGQVIDMRPKFDKNGLGFNPRKHNASLKPDILSPIKFVTGGVIQDGQVNAITNGEEVDSDLYFCALITDSSSMTLSPSLQSREASALLKWKESLDSQSQTTLSSWSGNNSCNWLGVSCNEDSMSVSTVNLTNMRLKGTFESFNFSSFPNIKIYLLNNYLSGSIPSEIGKLLHMKKLFLSGNYLSGSIPREIGKLENITNLLLNDNNLSGSIPKEIGMMRSIVDIDLSNNNLCGKIPAAIGNLSHLRYLGFPGNHLSGTIPMELNILGNLETFSVFDNNFTGQFPQNICVGANLKYIGAYNNHFIGRVLRSLKNCSSLIRLRLENNHFEENITNYFGVNPNLKFMGLDNNNFYGHLSSNLGKFHNLTHLHISRNHISGSIPPELEEASNLYSIDLSSNHLTGEIPKELGNLTKLGRLILNNNRLSGNVKVASLKELEILDVAANNLSGFIPKQLVTSSRLFDLNLSHNKLRGNIPDEFGKFHALESLDLSGNILDGTIPQMLGKLTHLETLNISHNNLSGFIPSSIDQMISLSFVDISYNQLKGPLPDMRVFNNATIEVLRNNSDLCGKVLGLKSCSGSHNHKTNNLILLIVLPLAPGILMLAFVCFKLSKHLCRTRTTRDNQDGGIIVAPNNAFTIWSFDGKMVYENIIEATEEFDDKYLIGVGTHGSVYKAELHTGQIVAVKKIHLATNGENSNIRCFTSEIQALTEIRHRNIVKLYGFCSHSRVSLLVYEFMEKGSLEKILKDDEQAIEFDWNKRVNVIKDVANALCYMHLDCFPPIVHRDISSKNILMDLEYVARVSDFGTAKLLNPNSANWTSFAGTLGYSAPELAYTMEVNEKCDVYSFGVLALEILHGKHPGDIISNSIQWNTMAGPTLDTMSFMDMLDQRLPRSMNTKTKQILSITKTLISCLDQSPRSRPTMEQVSMEISIASYFC 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01326 937 Gene3D Phosphorylase Kinase; domain 1 633 736 - -
Vivi6g01326 937 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 269 582 - -
Vivi6g01326 937 Pfam Leucine rich repeat 437 494 IPR001611 GO:0005515
Vivi6g01326 937 FunFam MDIS1-interacting receptor like kinase 2 737 935 - -
Vivi6g01326 937 ProSitePatterns Tyrosine protein kinases specific active-site signature. 782 794 IPR008266 GO:0004672|GO:0006468
Vivi6g01326 937 Pfam Protein kinase domain 660 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01326 937 ProSiteProfiles Protein kinase domain profile. 658 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01326 937 Pfam Leucine rich repeat N-terminal domain 85 122 IPR013210 -
Vivi6g01326 937 SUPERFAMILY L domain-like 127 287 - -
Vivi6g01326 937 ProSitePatterns Protein kinases ATP-binding region signature. 664 687 IPR017441 GO:0005524
Vivi6g01326 937 Gene3D Ribonuclease Inhibitor 294 587 IPR032675 -
Vivi6g01326 937 PANTHER LEUCINE RICH REPEAT KINASE 2 132 266 - -
Vivi6g01326 937 FunFam Leucine-rich repeat receptor protein kinase MSP1 623 736 - -
Vivi6g01326 937 Gene3D Ribonuclease Inhibitor 85 220 IPR032675 -
Vivi6g01326 937 Gene3D Ribonuclease Inhibitor 221 293 IPR032675 -
Vivi6g01326 937 SUPERFAMILY RNI-like 238 562 - -
Vivi6g01326 937 Gene3D Transferase(Phosphotransferase) domain 1 737 934 - -
Vivi6g01326 937 Pfam Leucine Rich Repeat 367 387 IPR001611 GO:0005515
Vivi6g01326 937 Pfam Leucine Rich Repeat 509 529 IPR001611 GO:0005515
Vivi6g01326 937 FunFam Nuclear pore complex protein NUP107 83 234 - -
Vivi6g01326 937 SUPERFAMILY Protein kinase-like (PK-like) 641 927 IPR011009 -
Vivi6g01326 937 SMART LRR_typ_2 435 459 IPR003591 -
Vivi6g01326 937 SMART LRR_typ_2 365 389 IPR003591 -
Vivi6g01326 937 SMART LRR_typ_2 507 531 IPR003591 -
Vivi6g01326 937 SMART LRR_typ_2 173 197 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01326 Vivi-Chr6 53919187 53939222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01326 148 830 Receptor kinase-like Gene Family AT4G08850 46.373 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi6g01326 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01326 - - vvo:131634792 1224.92